PDB entry 6ld9

View 6ld9 on RCSB PDB site
Description: Crystal structure of cystathionine gamma synthase from Xanthomonas oryzae pv. oryzae in complex with cystathionine
Class: biosynthetic protein
Keywords: cysathionine gamma synthase, PLP dependent enzyme, methionine biosynthesis pathway, BIOSYNTHETIC PROTEIN
Deposited on 2019-11-20, released 2020-11-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-11-25, with a file datestamp of 2020-11-20.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cystathionine gamma-synthase
    Species: Xanthomonas oryzae pv. oryzae KACC 10331 [TaxId:291331]
    Gene: metB, XOO1818
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ld9a_
  • Chain 'B':
    Compound: cystathionine gamma-synthase
    Species: Xanthomonas oryzae pv. oryzae KACC 10331 [TaxId:291331]
    Gene: metB, XOO1818
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ld9b_
  • Chain 'C':
    Compound: cystathionine gamma-synthase
    Species: Xanthomonas oryzae pv. oryzae KACC 10331 [TaxId:291331]
    Gene: metB, XOO1818
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ld9c_
  • Chain 'D':
    Compound: cystathionine gamma-synthase
    Species: Xanthomonas oryzae pv. oryzae KACC 10331 [TaxId:291331]
    Gene: metB, XOO1818
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ld9d_
  • Heterogens: E9U, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ld9A (A:)
gshmsfryptdtpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrs
gnptrdllgealaeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfn
alakkghfalitadltdprsladalaqspklvlietpsnpllritdlrfvieaakkvgal
tvvdntflspalqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanal
gltgspfdafltlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghala
arqqkgfgammsfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaea
raaagisdgllrlsigiesaedllidlraglsraeatltttnrkkvda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ld9A (A:)
tpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrsgnptrdllgea
laeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfnalakkghfali
tadltdprsladalaqspklvlietpsnpllritdlrfvieaakkvgaltvvdntflspa
lqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanalgltgspfdafl
tlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghalaarqqkgfgamm
sfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaearaaagisdgll
rlsigiesaedllidlraglsraeatl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ld9B (B:)
gshmsfryptdtpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrs
gnptrdllgealaeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfn
alakkghfalitadltdprsladalaqspklvlietpsnpllritdlrfvieaakkvgal
tvvdntflspalqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanal
gltgspfdafltlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghala
arqqkgfgammsfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaea
raaagisdgllrlsigiesaedllidlraglsraeatltttnrkkvda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ld9B (B:)
tpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrsgnptrdllgea
laeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfnalakkghfali
tadltdprsladalaqspklvlietpsnpllritdlrfvieaakkvgaltvvdntflspa
lqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanalgltgspfdafl
tlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghalaarqqkgfgamm
sfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaearaaagisdgll
rlsigiesaedllidlraglsraeatl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ld9C (C:)
gshmsfryptdtpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrs
gnptrdllgealaeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfn
alakkghfalitadltdprsladalaqspklvlietpsnpllritdlrfvieaakkvgal
tvvdntflspalqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanal
gltgspfdafltlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghala
arqqkgfgammsfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaea
raaagisdgllrlsigiesaedllidlraglsraeatltttnrkkvda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ld9C (C:)
tpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrsgnptrdllgea
laeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfnalakkghfali
tadltdprsladalaqspklvlietpsnpllritdlrfvieaakkvgaltvvdntflspa
lqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanalgltgspfdafl
tlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghalaarqqkgfgamm
sfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaearaaagisdgll
rlsigiesaedllidlraglsraeatlt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6ld9D (D:)
gshmsfryptdtpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrs
gnptrdllgealaeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfn
alakkghfalitadltdprsladalaqspklvlietpsnpllritdlrfvieaakkvgal
tvvdntflspalqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanal
gltgspfdafltlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghala
arqqkgfgammsfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaea
raaagisdgllrlsigiesaedllidlraglsraeatltttnrkkvda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ld9D (D:)
tpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrsgnptrdllgea
laeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfnalakkghfali
tadltdprsladalaqspklvlietpsnpllritdlrfvieaakkvgaltvvdntflspa
lqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanalgltgspfdafl
tlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghalaarqqkgfgamm
sfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaearaaagisdgll
rlsigiesaedllidlraglsraeatl