PDB entry 6ld7

View 6ld7 on RCSB PDB site
Description: Native Structure of cystathionine gamma synthase (XometB) from Xanthomonas oryzae pv. oryzae
Class: biosynthetic protein
Keywords: cysathionine gamma synthase, PLP dependent enzyme, methionine biosynthesis pathway, BIOSYNTHETIC PROTEIN
Deposited on 2019-11-20, released 2020-11-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-11-25, with a file datestamp of 2020-11-20.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cystathionine gamma-synthase
    Species: Xanthomonas oryzae pv. oryzae KACC 10331 [TaxId:291331]
    Gene: metB, XOO1818
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5H1U9
      • engineered mutation (136)
    Domains in SCOPe 2.08: d6ld7a_
  • Chain 'B':
    Compound: cystathionine gamma-synthase
    Species: Xanthomonas oryzae pv. oryzae KACC 10331 [TaxId:291331]
    Gene: metB, XOO1818
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5H1U9
      • engineered mutation (136)
    Domains in SCOPe 2.08: d6ld7b_
  • Chain 'C':
    Compound: cystathionine gamma-synthase
    Species: Xanthomonas oryzae pv. oryzae KACC 10331 [TaxId:291331]
    Gene: metB, XOO1818
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5H1U9
      • engineered mutation (136)
    Domains in SCOPe 2.08: d6ld7c_
  • Chain 'D':
    Compound: cystathionine gamma-synthase
    Species: Xanthomonas oryzae pv. oryzae KACC 10331 [TaxId:291331]
    Gene: metB, XOO1818
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5H1U9
      • engineered mutation (136)
    Domains in SCOPe 2.08: d6ld7d_
  • Heterogens: LLP, PEG, PGE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ld7A (A:)
gshmsfrdpthtpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrs
gnptrdllgealaeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfn
alakkghfalitadltvprsladalaqspklvlietpsnpllritdlrfvieaakkvgal
tvvdntflspalqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanal
gltgspfdafltlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghala
arqqkgfgammsfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaea
raaagisdgllrlsigiesaedllidlraglsraeatltttnrkkvda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ld7A (A:)
tpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrsgnptrdllgea
laeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfnalakkghfali
tadltvprsladalaqspklvlietpsnpllritdlrfvieaakkvgaltvvdntflspa
lqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanalgltgspfdafl
tlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghalaarqqkgfgamm
sfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaearaaagisdgll
rlsigiesaedllidlraglsraeatl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ld7B (B:)
gshmsfrdpthtpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrs
gnptrdllgealaeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfn
alakkghfalitadltvprsladalaqspklvlietpsnpllritdlrfvieaakkvgal
tvvdntflspalqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanal
gltgspfdafltlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghala
arqqkgfgammsfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaea
raaagisdgllrlsigiesaedllidlraglsraeatltttnrkkvda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ld7B (B:)
pctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrsgnptrdllgeal
aeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfnalakkghfalit
adltvprsladalaqspklvlietpsnpllritdlrfvieaakkvgaltvvdntflspal
qkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanalgltgspfdaflt
lrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghalaarqqkgfgamms
feleggeaavrafvdglryftlaeslggvesliahpasmthaamtaearaaagisdgllr
lsigiesaedllidlraglsraeatl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ld7C (C:)
gshmsfrdpthtpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrs
gnptrdllgealaeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfn
alakkghfalitadltvprsladalaqspklvlietpsnpllritdlrfvieaakkvgal
tvvdntflspalqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanal
gltgspfdafltlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghala
arqqkgfgammsfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaea
raaagisdgllrlsigiesaedllidlraglsraeatltttnrkkvda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ld7C (C:)
tpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrsgnptrdllgea
laeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfnalakkghfali
tadltvprsladalaqspklvlietpsnpllritdlrfvieaakkvgaltvvdntflspa
lqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanalgltgspfdafl
tlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghalaarqqkgfgamm
sfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaearaaagisdgll
rlsigiesaedllidlraglsraeatlt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6ld7D (D:)
gshmsfrdpthtpctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrs
gnptrdllgealaeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfn
alakkghfalitadltvprsladalaqspklvlietpsnpllritdlrfvieaakkvgal
tvvdntflspalqkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanal
gltgspfdafltlrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghala
arqqkgfgammsfeleggeaavrafvdglryftlaeslggvesliahpasmthaamtaea
raaagisdgllrlsigiesaedllidlraglsraeatltttnrkkvda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ld7D (D:)
pctaataavragidrdtaygavtppivlssnfsfdgfgnkrqydytrsgnptrdllgeal
aeleggaggvitstgmgainlvlnavlqpgdtlvvphdayggswrlfnalakkghfalit
adltvprsladalaqspklvlietpsnpllritdlrfvieaakkvgaltvvdntflspal
qkpldfgadlvlhsttkyinghsdvvggavvardaelhqqlvwwanalgltgspfdaflt
lrglrtldarlrvhqenadaiaelldghamvnqvyfpglathpghalaarqqkgfgamms
feleggeaavrafvdglryftlaeslggvesliahpasmthaamtaearaaagisdgllr
lsigiesaedllidlraglsraeatl