PDB entry 6lcp

View 6lcp on RCSB PDB site
Description: cryo-em structure of dnf1 from chaetomium thermophilum in the e2p state
Deposited on 2019-11-19, released 2020-04-29
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: EM
Resolution: 3.48 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Phospholipid-transporting ATPase
    Species: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId:759272]
    Gene: CTHT_0012810
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Cdc50
    Species: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId:759272]
    Gene: CTHT_0052360
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, BEF, POV, P5S, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lcpA (A:)
    mappqeegggngtelsmqrsrwatrrltvksgarkrlslmtraqaknsatekrqsgvtdd
    gspaadgdqkegsisssnnggsaprklyfnlplppelkdeeghpiqqfprnkirtakytp
    lsfipknlwfqfhnianifflflvilvifpifggvnpglnsvpliviitvtaikdaiedy
    rrtildielnnapvhrlqgwenvnvekdnvslwrrfkkansrffgsiwhlierlwkedaq
    smrqrfasadprmsietrtapwdpshrrsvashteeiqmtpvpspvphdpdvptvssaie
    neatllqnlkgdlinheipvsgkarfhkdawknlvvgdfvriynddelpadiiilatsdp
    dgacyvetknldgetnlkvrqalrcgrtlkhardceraqfvieseppqpnlykyngairw
    kqrvpwdphgepremsepigidnlllrgchlrntewalgvvvftghdtkimmnagitpsk
    rariarelnfnvicnfgillimcliaaiangiawgktdaslawfeygsiggtpaltgfit
    fwaavivfqnlvpislyisleivrtlqaffiysdvgmyyekidqpcipkswnisddvgqi
    eyifsdktgtltqnvmefkkatingqpygeayteaqagmdrrrginveeeakvireeiaa
    akvrairglrelhdnpylhdedmtfiapdfvedlagkngpeqqqatehfmlalalchtvv
    aekqpgdppkmifkaqspdeaalvatardmgftvlgmsdgginvnvmgkdmhfpvlsiie
    fnssrkrmstivrmpdgrillfckgadsviysrlkkgeqadmrretaqhlemfaveglrt
    lciaerelseeeyrewrrehdlaatalenreekleevadkierdltllggtaiedrlqdg
    vpdtialladagiklwvltgdkvetainigfscnllnndmdllrlqvnesdasteddylq
    laeeqlktnlerfnmtgddeelkrarkdhnapsptyalvidgftlrwvlsdslkqkflll
    ckqcksvlccrvspaqkaavvsmvkngldvmtlsigdgandvamiqeadvgvgiageegr
    qavmssdfaigqfrflqrlvlvhgrwsyrrlaetisnffyknmiwtwsifwyqcycnfdi
    ayifeytyilmfnlfftsvpvilmgvldqdvsdtvslavpqlyrrgierkewtqtkfwly
    midgvyqsvmsffipfifvvltptaagngldvsertrlgayiahpavitingyilintyr
    wdwlmllsivlsdvfiffwtgvytattysagfyqaapqvyqeltfwmclivtpalcllpr
    lvvkciqkqrfpydvdiireqanrgdfaaadaaavaalggpervegeslgslsssgkgsg
    rskkskhqqyasvdedrrpiyppsiathntraqngsdgttyimqsrtstelqqempfdrd
    reeetpavrpsiertrpsydrirrsidrvrpsfeasndftsaarlsriesthsslghtys
    hqresyagessgaqqgqepgqrrfnlatvrkrglsafskksidttegeppreppm
    

    Sequence, based on observed residues (ATOM records):
    >6lcpA (A:)
    aprklyfnlppelkdeeghpiqqfprnkirtakytplsfipknlwfqfhnianifflflv
    ilvifpifggvnpglnsvpliviitvtaikdaiedyrrtildielnnapvhrlsgkarfh
    kdawknlvvgdfvriynddelpadiiilatsdpdgacyvetknldgetnlkvrqalrcgr
    tlkhardceraqfvieseppqpnlykyngairwkepremsepigidnlllrgchlrntew
    algvvvftghdtkimmnagitpskrariarelnfnvicnfgillimcliaaiangiawgk
    tdaslawfeygsiggtpaltgfitfwaavivfqnlvpislyisleivrtlqaffiysdvg
    myyekidqpcipkswnisddvgqieyifsdktgtltqnvmefkkatingqpygeayteaq
    agmdrrrginveeeakvireeiaaakvrairglrelhdnpylhdedmtfiapdfvedlag
    kngpeqqqatehfmlalalchtvvaekqpgdppkmifkaqspdeaalvatardmgftvlg
    msdgginvnvmgkdmhfpvlsiiefnssrkrmstivrmpdgrillfckgadsviysrlkk
    geqadmrretaqhlemfaveglrtlciaerelseeeyrewrrehdlaatalenreeklee
    vadkierdltllggtaiedrlqdgvpdtialladagiklwvltgdkvetainigfscnll
    nndmdllrlqvnesdasteddylqlaeeqlktnlerfnmtgddeelkrarkdhnapspty
    alvidgftlrwvlsdslkqkflllckqcksvlccrvspaqkaavvsmvkngldvmtlsig
    dgandvamiqeadvgvgiageegrqavmssdfaigqfrflqrlvlvhgrwsyrrlaetis
    nffyknmiwtwsifwyqcycnfdiayifeytyilmfnlfftsvpvilmgvldqdvsdtvs
    lavpqlyrrgierkewtqtkfwlymidgvyqsvmsffipfifvvltptaagngldvsert
    rlgayiahpavitingyilintyrwdwlmllsivlsdvfiffwtgvytattysagfyqaa
    pqvyqeltfwmclivtpalcllprlvvkciqkqrfpydvdiireqanrgdfaaadaaava
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lcpB (B:)
    maprrrrgagqdgsddgrsdsdapknrppntafrqqrmrawqcvltpklivtvfsilaai
    ylgfgawltylahtvrdlkidytdcltsapkddfetipqnhitahfsakdstfdpykaqw
    ktterevqvanytdnrqfcivrfnipedlqptisffyylenfyqnhrryvnsfnakqllg
    davdgktindstcdpithdpkgtgkivypcglvansifndtfssplalavrnssdssrpy
    nmttkgiawpglkdlygktsysldqivpppnwerrykygyqennpppdlktdelfqnwmm
    laaapnfyklyqkndthpmlagqyeieiesnfdvtvykgrkafvittlstmgsrniwpgi
    iflivggiclvldiyfilsffiwrprklgdpsylswnqpsapgghss
    

    Sequence, based on observed residues (ATOM records):
    >6lcpB (B:)
    apknrppntafrqqrmrawqcvltpklivtvfsilaaiylgfgawltylahtvrdlkidy
    tdcltsapkddfetipqnhitahfsakdstfdpykaqwktterevqvanytdnrqfcivr
    fnipedlqptisffyylenfyqnhrryvnsfnakqllgdavdgktindstcdpithdpkg
    tgkivypcglvansifndtfssplalavrnssdssrpynmttkgiawpglkdlygktsys
    ldqivpppnwerrykygyqennpppdlktdelfqnwmmlaaapnfyklyqkndthpmlag
    qyeieiesnfdvtvykgrkafvittlstmgsrniwpgiiflivggiclvldiyfilsffi
    wrprklgdpsylswnq