PDB entry 6lbq

View 6lbq on RCSB PDB site
Description: Cryo-EM structure of echovirus 11 empty particle at pH 5.5
Class: virus
Keywords: virus
Deposited on 2019-11-14, released 2020-10-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-10-07, with a file datestamp of 2020-10-02.
Experiment type: EM
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Echovirus E11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LBQ (0-225)
    Domains in SCOPe 2.08: d6lbqa_
  • Chain 'B':
    Compound: capsid protein VP2
    Species: Echovirus E11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LBQ (0-244)
  • Chain 'C':
    Compound: capsid protein vp3
    Species: Echovirus E11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LBQ (0-230)
    Domains in SCOPe 2.08: d6lbqc_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6lbqA (A:)
sessienflcrsacvymgeyhttntdtsklfaswtinarrmvqmrrklelftyvrfdmev
tfvitskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnapp
rmsipfisignaysnfydgwshfsqngvygyntlnhmgqiyvrhvngssplpmtstvrmy
fkpkhvkvwvprpprlcqyknastvnftptnitekrqsinyipetv

    Sequence, based on observed residues (ATOM records): (download) 
    >6lbqA (A:)
sessienflcrsacvymgeyhttntdtsklfaswtinarrmvqmrrklelftyvrfdmev
tfvitskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnapp
rmsipfisignaysnfydgwshgvygyntlnhmgqiyvrhvngssplpmtstvrmyfkpk
hvkvwvprpprlcqyknastvnftptnitekrqsinyipetv

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6lbqC (C:)
glpvmntpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnveg
kldtmeiyripvqsgnhqssqvfgfqvqpgldnvfkhtllgeilnyyahwsgsikltfvf
cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqthyrlvq
qdeytsagnvtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfi

    Sequence, based on observed residues (ATOM records): (download) 
    >6lbqC (C:)
glpvmntpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnveg
kldtmeiyripvqsgnhqssqvfgfqvqpgldnvfkhtllgeilnyyahwsgsikltfvf
cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqtytsagn
vtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfi