PDB entry 6lb1

View 6lb1 on RCSB PDB site
Description: Cryo-EM structure of echovirus 11 A-particle at pH 5.5
Class: virus
Keywords: Cryo-EM structure, echovirus 11, A-particle, pH 5.5, VIRUS
Deposited on 2019-11-13, released 2020-10-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-10-07, with a file datestamp of 2020-10-02.
Experiment type: EM
Resolution: 2.58 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Echovirus E11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LB1 (0-225)
    Domains in SCOPe 2.08: d6lb1a_
  • Chain 'B':
    Compound: capsid protein VP2
    Species: Echovirus E11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LB1 (0-244)
  • Chain 'C':
    Compound: capsid protein vp3
    Species: Echovirus E11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LB1 (0-230)
    Domains in SCOPe 2.08: d6lb1c_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6lb1A (A:)
    sessienflcrsacvymgeyhttntdtsklfaswtinarrmvqmrrklelftyvrfdmev
    tfvitskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnapp
    rmsipfisignaysnfydgwshfsqngvygyntlnhmgqiyvrhvngssplpmtstvrmy
    fkpkhvkvwvprpprlcqyknastvnftptnitekrqsinyipetv
    

    Sequence, based on observed residues (ATOM records): (download)
    >6lb1A (A:)
    sessienflcrsacvymgeyhttntdtsklfaswtinarrmvqmrrklelftyvrfdmev
    tfvitskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnapp
    rmsipfisignaysnfydgwshgvygyntlnhmgqiyvrhvngssplpmtstvrmyfkpk
    hvkvwvprpprlcqyknastvnftptnitekrqsinyipetv
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >6lb1C (C:)
    glpvmntpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnveg
    kldtmeiyripvqsgnhqssqvfgfqvqpgldnvfkhtllgeilnyyahwsgsikltfvf
    cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqthyrlvq
    qdeytsagnvtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfi
    

    Sequence, based on observed residues (ATOM records): (download)
    >6lb1C (C:)
    glpvmntpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnveg
    kldtmeiyripvqsgnhqssqvfgfqvqpgldnvfkhtllgeilnyyahwsgsikltfvf
    cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqtytsagn
    vtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfi