PDB entry 6la7
View 6la7 on RCSB PDB site
Description: Cryo-EM structure of echovirus 11 complexed with its uncoating receptor FcRn at pH 5.5
Class: virus
Keywords: Cryo-EM structure, echovirus 11, FcRn, pH 5.5, VIRUS
Deposited on
2019-11-12, released
2020-10-07
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-10-07, with a file datestamp of
2020-10-02.
Experiment type: EM
Resolution: 2.82 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Capsid protein VP1
Species: Echovirus E11 [TaxId:12078]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6la7a_ - Chain 'B':
Compound: capsid protein VP2
Species: Echovirus E11 [TaxId:12078]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: capsid protein vp3
Species: Echovirus E11 [TaxId:12078]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6la7c_ - Chain 'D':
Compound: capsid protein VP4
Species: Echovirus E11 [TaxId:12078]
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: igg receptor fcrn large subunit p51
Species: Homo sapiens [TaxId:9606]
Gene: FCRN
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6la7e1, d6la7e2 - Chain 'F':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6la7f_
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>6la7A (A:)
vveavenavarvadtissgpsnsqavpaltavetghtsqvtpsdtiqtrhvrnyhsrses
sienflcrsacvymgeyhttntdtsklfaswtinarrmvqmrrklelftyvrfdmevtfv
itskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnapprms
ipfisignaysnfydgwshfsqngvygyntlnhmgqiyvrhvngssplpmtstvrmyfkp
khvkvwvprpprlcqyknastvnftptnitekrqsinyipetvkp
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>6la7C (C:)
glpvmntpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnveg
kldtmeiyripvqsgnhqssqvfgfqvqpgldnvfkhtllgeilnyyahwsgsikltfvf
cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqthyrlvq
qdeytsagnvtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfieqsallq
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>6la7E (E:)
lsllyhltavsspapgtpafwvsgwlgpqqylsynslrgeaepcgawvwenqvswyweke
ttdlrikeklfleafkalggkgpytlqgllgcelgpdntsvptakfalngeefmnfdlkq
gtwggdwpealaisqrwqqqdkaankeltfllfscphrlrehlergrgnlewkeppsmrl
karpsspgfsvltcsafsfyppelqlrflrnglaagtgqgdfgpnsdgsfhasssltvks
gdehhyccivqhaglaqplrvel
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>6la7F (F:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm