PDB entry 6la5

View 6la5 on RCSB PDB site
Description: Cryo-EM structure of echovirus 11 complexed with its attaching receptor CD55 at pH 7.4
Class: virus
Keywords: Cryo-EM structure, echovirus 11, CD55, pH 7.4, VIRUS
Deposited on 2019-11-12, released 2020-10-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-10-07, with a file datestamp of 2020-10-02.
Experiment type: EM
Resolution: 2.86 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Echovirus E11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LA5 (0-284)
    Domains in SCOPe 2.07: d6la5a_
  • Chain 'B':
    Compound: capsid protein VP2
    Species: Echovirus E11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LA5 (0-250)
  • Chain 'C':
    Compound: capsid protein vp3
    Species: Echovirus E11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LA5 (0-237)
    Domains in SCOPe 2.07: d6la5c_
  • Chain 'D':
    Compound: capsid protein VP4
    Species: Echovirus E11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LA5 (0-68)
  • Chain 'E':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD55, CR, DAF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6la5e1, d6la5e2
  • Heterogens: SPH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6la5A (A:)
vveavenavarvadtissgpsnsqavpaltavetghtsqvtpsdtiqtrhvrnyhsrses
sienflcrsacvymgeyhttntdtsklfaswtinarrmvqmrrklelftyvrfdmevtfv
itskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnapprms
ipfisignaysnfydgwshfsqngvygyntlnhmgqiyvrhvngssplpmtstvrmyfkp
khvkvwvprpprlcqyknastvnftptnitekrqsinyipetvkp

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6la5C (C:)
glpvmntpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnveg
kldtmeiyripvqsgnhqssqvfgfqvqpgldnvfkhtllgeilnyyahwsgsikltfvf
cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqthyrlvq
qdeytsagnvtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfieqsallq

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6la5E (E:)
kscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqwsdplpec
reiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnndegewsgpp
pecrg