PDB entry 6l9n

View 6l9n on RCSB PDB site
Description: H2-Ld complexed with A5 peptide
Class: immune system
Keywords: Major Histocompatibility Complex, IMMUNE SYSTEM
Deposited on 2019-11-10, released 2020-11-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-16, with a file datestamp of 2021-06-11.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-277)
    Domains in SCOPe 2.08: d6l9na1, d6l9na2
  • Chain 'B':
    Compound: b2m
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-98)
    Domains in SCOPe 2.08: d6l9nb_
  • Chain 'C':
    Compound: ser-pro-ser-tyr-ala-tyr-his-gln-phe
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-8)
  • Chain 'D':
    Compound: MHC
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-277)
    Domains in SCOPe 2.08: d6l9nd1, d6l9nd2
  • Chain 'E':
    Compound: b2m
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-98)
    Domains in SCOPe 2.08: d6l9ne_
  • Chain 'F':
    Compound: ser-pro-ser-tyr-ala-tyr-his-gln-phe
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-8)
  • Chain 'G':
    Compound: MHC
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-277)
    Domains in SCOPe 2.08: d6l9ng1, d6l9ng2
  • Chain 'H':
    Compound: b2m
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-98)
    Domains in SCOPe 2.08: d6l9nh_
  • Chain 'I':
    Compound: ser-pro-ser-tyr-ala-tyr-his-gln-phe
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-8)
  • Chain 'J':
    Compound: MHC
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-277)
    Domains in SCOPe 2.08: d6l9nj1, d6l9nj2
  • Chain 'K':
    Compound: b2m
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-98)
    Domains in SCOPe 2.08: d6l9nk_
  • Chain 'L':
    Compound: ser-pro-ser-tyr-ala-tyr-his-gln-phe
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9N (0-8)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9nA (A:)
agphsmryfetavsrpglgepryisvgyvdnkefvrfdsdaenpryepqapwmeqegpey
weritqiakgqeqwfrvnlrtllgyynqsaggthtlqwmygcdvgsdgrllrgyeqfayd
gcdyialnedlktwtaadmaaqitrrkweqagaaeyyraylegecvewlhrylkngnatl
lrtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdg
tfqkwasvvvplgkeqnytcrvyheglpepltlrwepp

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9nB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9nD (D:)
agphsmryfetavsrpglgepryisvgyvdnkefvrfdsdaenpryepqapwmeqegpey
weritqiakgqeqwfrvnlrtllgyynqsaggthtlqwmygcdvgsdgrllrgyeqfayd
gcdyialnedlktwtaadmaaqitrrkweqagaaeyyraylegecvewlhrylkngnatl
lrtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdg
tfqkwasvvvplgkeqnytcrvyheglpepltlrwepp

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9nE (E:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9nG (G:)
agphsmryfetavsrpglgepryisvgyvdnkefvrfdsdaenpryepqapwmeqegpey
weritqiakgqeqwfrvnlrtllgyynqsaggthtlqwmygcdvgsdgrllrgyeqfayd
gcdyialnedlktwtaadmaaqitrrkweqagaaeyyraylegecvewlhrylkngnatl
lrtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdg
tfqkwasvvvplgkeqnytcrvyheglpepltlrwepp

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9nH (H:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9nJ (J:)
agphsmryfetavsrpglgepryisvgyvdnkefvrfdsdaenpryepqapwmeqegpey
weritqiakgqeqwfrvnlrtllgyynqsaggthtlqwmygcdvgsdgrllrgyeqfayd
gcdyialnedlktwtaadmaaqitrrkweqagaaeyyraylegecvewlhrylkngnatl
lrtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdg
tfqkwasvvvplgkeqnytcrvyheglpepltlrwepp

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9nK (K:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'L':
    No sequence available.