PDB entry 6l8f

View 6l8f on RCSB PDB site
Description: Crystal structure of heterotetrameric complex of YoeB-YefM toxin-antitoxin from Staphylococcus aureus.
Class: toxin/antitoxin
Keywords: toxin-antitoxin, microbial RNase, YoeB, Staphylococcus aureus, TOXIN, TOXIN-ANTITOXIN complex
Deposited on 2019-11-06, released 2020-09-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-10-21, with a file datestamp of 2020-10-16.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antitoxin
    Species: Staphylococcus aureus (strain NCTC 8325 / PS 47) [TaxId:93061]
    Gene: SAOUHSC_02692
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G285 (6-88)
      • expression tag (5)
    Domains in SCOPe 2.08: d6l8fa1, d6l8fa2
  • Chain 'B':
    Compound: Antitoxin
    Species: Staphylococcus aureus (strain NCTC 8325 / PS 47) [TaxId:93061]
    Gene: SAOUHSC_02692
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6l8fb_
  • Chain 'C':
    Compound: YoeB
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Gene: SAOUHSC_02691
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6l8fc_
  • Chain 'D':
    Compound: YoeB
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Gene: SAOUHSC_02691
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6l8fd_
  • Chain 'E':
    Compound: Antitoxin
    Species: Staphylococcus aureus (strain NCTC 8325 / PS 47) [TaxId:93061]
    Gene: SAOUHSC_02692
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6l8fe_
  • Chain 'F':
    Compound: Antitoxin
    Species: Staphylococcus aureus (strain NCTC 8325 / PS 47) [TaxId:93061]
    Gene: SAOUHSC_02692
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G285 (6-88)
      • expression tag (5)
    Domains in SCOPe 2.08: d6l8ff1, d6l8ff2
  • Chain 'G':
    Compound: YoeB
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Gene: SAOUHSC_02691
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6l8fg_
  • Chain 'H':
    Compound: YoeB
    Species: Staphylococcus aureus (strain NCTC 8325) [TaxId:93061]
    Gene: SAOUHSC_02691
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6l8fh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6l8fA (A:)
hhhhhhmiiknysyarqnlkalmtkvnddsdmvtvtstddknvvimsesdynsmmetlyl
qqnpnnaehlaqsiadlergktitkdidv

    Sequence, based on observed residues (ATOM records): (download) 
    >6l8fA (A:)
hmiiknysyarqnlkalmtkvnddsdmvtvtstddknvvimsesdynsmmetlylqqnpn
naehlaqsiadlergktitkdidv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6l8fB (B:)
hhhhhhmiiknysyarqnlkalmtkvnddsdmvtvtstddknvvimsesdynsmmetlyl
qqnpnnaehlaqsiadlergktitkdidv

    Sequence, based on observed residues (ATOM records): (download) 
    >6l8fB (B:)
miiknysyarqnlkalmtkvnddsdmvtvtstddknvvimsesdynsmmetlylqqnpnn
aehlaqsiadlergktitkdidv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6l8fC (C:)
marlnitfspqafedykyfqqndkkmvkkinellksidrngalegigkpeklksnltgyy
srrinhehrlvytvddnhikiasckyhy

    Sequence, based on observed residues (ATOM records): (download) 
    >6l8fC (C:)
arlnitfspqafedykyfqqndkkmvkkinellksidrngalegigkpeklksnltgyys
rrinhehrlvytvddnhikiasckyhy

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6l8fD (D:)
marlnitfspqafedykyfqqndkkmvkkinellksidrngalegigkpeklksnltgyy
srrinhehrlvytvddnhikiasckyhy

    Sequence, based on observed residues (ATOM records): (download) 
    >6l8fD (D:)
arlnitfspqafedykyfqqndkkmvkkinellksidrngalegigkpeklksnltgyys
rrinhehrlvytvddnhikiasckyhy

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6l8fE (E:)
hhhhhhmiiknysyarqnlkalmtkvnddsdmvtvtstddknvvimsesdynsmmetlyl
qqnpnnaehlaqsiadlergktitkdidv

    Sequence, based on observed residues (ATOM records): (download) 
    >6l8fE (E:)
miiknysyarqnlkalmtkvnddsdmvtvtstddknvvimsesdynsmmetlylqqnpnn
aehlaqsiadlergktitkdidv

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6l8fF (F:)
hhhhhhmiiknysyarqnlkalmtkvnddsdmvtvtstddknvvimsesdynsmmetlyl
qqnpnnaehlaqsiadlergktitkdidv

    Sequence, based on observed residues (ATOM records): (download) 
    >6l8fF (F:)
hmiiknysyarqnlkalmtkvnddsdmvtvtstddknvvimsesdynsmmetlylqqnpn
naehlaqsiadlergktitkdidv

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6l8fG (G:)
marlnitfspqafedykyfqqndkkmvkkinellksidrngalegigkpeklksnltgyy
srrinhehrlvytvddnhikiasckyhy

    Sequence, based on observed residues (ATOM records): (download) 
    >6l8fG (G:)
arlnitfspqafedykyfqqndkkmvkkinellksidrngalegigkpeklksnltgyys
rrinhehrlvytvddnhikiasckyhy

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6l8fH (H:)
marlnitfspqafedykyfqqndkkmvkkinellksidrngalegigkpeklksnltgyy
srrinhehrlvytvddnhikiasckyhy

    Sequence, based on observed residues (ATOM records): (download) 
    >6l8fH (H:)
arlnitfspqafedykyfqqndkkmvkkinellksidrngalegigkpeklksnltgyys
rrinhehrlvytvddnhikiasckyhy