PDB entry 6l2n

View 6l2n on RCSB PDB site
Description: crystal structure of the r.pabi(y68f-k154a)-dsdna(gtac-3bp-gtac) complex
Deposited on 2019-10-05, released 2020-03-18
The last revision was dated 2020-05-27, with a file datestamp of 2020-05-22.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RE_R_Pab1 domain-containing protein
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Gene: PAB0105
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9V2B6 (1-End)
      • initiating methionine (0)
      • engineered mutation (61)
      • engineered mutation (147)
  • Chain 'B':
    Compound: RE_R_Pab1 domain-containing protein
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Gene: PAB0105
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9V2B6 (1-End)
      • engineered mutation (61)
      • engineered mutation (147)
  • Chain 'C':
    Compound: DNA (5'-d(*tp*cp*ap*gp*cp*ap*gp*tp*ap*cp*tp*ap*ap*gp*tp*ap*cp*tp*gp*cp*tp*gp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6l2nA (A:)
measvsfengkivvrlpitrptskirvkkiengvgipvstrkksfpsdenlrdyyiewqi
sfardgkydyelsrmvrlahehgiltyndiyellkfaddvksyledkgirrestneelyg
fniyedvypvakkelpsgefigivlkhaqravgyqsmvyvcipltnvepslagrvarrne
vvkyevpvdlmkellkafiiasethkndivkflrsiigts

    Sequence, based on observed residues (ATOM records):
    >6l2nA (A:)
measvsfengkivvrlpitrptskirvkkiengvgipvstrkksfpsdenlrdyyiewqi
sfardgkydyelsrmvrlahehgiltyndiyellkfaddvksyledkgirrestneelyg
fniyedvypvakkelpsgefigivlkhaqravgyqsmvyvcipltnvepslagrvarrne
vvkyevpvdlmkellkafiiasethkndivkflrsii

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6l2nB (B:)
measvsfengkivvrlpitrptskirvkkiengvgipvstrkksfpsdenlrdyyiewqi
sfardgkydyelsrmvrlahehgiltyndiyellkfaddvksyledkgirrestneelyg
fniyedvypvakkelpsgefigivlkhaqravgyqsmvyvcipltnvepslagrvarrne
vvkyevpvdlmkellkafiiasethkndivkflrsiigts

    Sequence, based on observed residues (ATOM records):
    >6l2nB (B:)
easvsivvrlpitrptskirvkkiengvgipvstrkksfpsdenlrdyyiewqisfardg
kydyelsrmvrlahehgiltyndiyellkfaddvksyledkgirrestneelygfniyed
vypvakkelpsgefigivlkhaqravgyqsmvyvcipltnvepslagrvarrnevvkyev
pvdlmkellkafiiasethkndivkflrsii

  • Chain 'C':
    No sequence available.