PDB entry 6l25

View 6l25 on RCSB PDB site
Description: Deoxyribonuclease from Staphylococcus aureus
Class: metal binding protein
Keywords: DNA binding protein, DNase, RNase, DNA repair system., METAL BINDING PROTEIN
Deposited on 2019-10-02, released 2020-05-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-05-13, with a file datestamp of 2020-05-08.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxyribonuclease ycfH
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: yabD, tatP, ycfH, ycfH_1, BN1321_120011, C7P97_09010, CSC83_12190, CSC87_02770, EP54_03105, EQ90_10980, ERS072840_02446, HMPREF3211_00370, M1K003_2676, NCTC10654_00570, NCTC10702_00886, NCTC13131_01111, NCTC5664_00191, NCTC7878_00052, RK64_02970, SAMEA1708674_03251
    Database cross-references and differences (RAF-indexed):
    • Uniprot W8U6D8 (17-End)
      • expression tag (16)
    Domains in SCOPe 2.08: d6l25a1, d6l25a2
  • Chain 'B':
    Compound: deoxyribonuclease ycfH
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: yabD, tatP, ycfH, ycfH_1, BN1321_120011, C7P97_09010, CSC83_12190, CSC87_02770, EP54_03105, EQ90_10980, ERS072840_02446, HMPREF3211_00370, M1K003_2676, NCTC10654_00570, NCTC10702_00886, NCTC13131_01111, NCTC5664_00191, NCTC7878_00052, RK64_02970, SAMEA1708674_03251
    Database cross-references and differences (RAF-indexed):
    • Uniprot W8U6D8 (17-End)
      • expression tag (16)
    Domains in SCOPe 2.08: d6l25b1, d6l25b2
  • Heterogens: MSE, PO4, NI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6l25A (A:)
hhhhhhssglvprgshmlidthvhlndeqydddlsevitrareagvdrmfvvgfnkstie
ramklideydflygiigwhpvdaidfteehlewieslaqhpkvigigemgldyhwdkspa
dvqkevfrkqialakrlklpiiihnreatqdcidilleehaeevggimhsfsgspeiadi
vtnklnfyislggpvtfknakqpkevakhvsmerllvetdapylsphpyrgkrneparvt
lvaeqiaelkglsyeevceqttknaeklfnlns

    Sequence, based on observed residues (ATOM records): (download) 
    >6l25A (A:)
mlidthvhlndeqydddlsevitrareagvdrmfvvgfnkstieramklideydflygii
gwhpvdaidfteehlewieslaqhpkvigigemgldyhwdkspadvqkevfrkqialakr
lklpiiihnreatqdcidilleehaeevggimhsfsgspeiadivtnklnfyislggpvt
fknakqpkevakhvsmerllvetdapylsphpyrgkrneparvtlvaeqiaelkglsyee
vceqttknaeklfnl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6l25B (B:)
hhhhhhssglvprgshmlidthvhlndeqydddlsevitrareagvdrmfvvgfnkstie
ramklideydflygiigwhpvdaidfteehlewieslaqhpkvigigemgldyhwdkspa
dvqkevfrkqialakrlklpiiihnreatqdcidilleehaeevggimhsfsgspeiadi
vtnklnfyislggpvtfknakqpkevakhvsmerllvetdapylsphpyrgkrneparvt
lvaeqiaelkglsyeevceqttknaeklfnlns

    Sequence, based on observed residues (ATOM records): (download) 
    >6l25B (B:)
mlidthvhlndeqydddlsevitrareagvdrmfvvgfnkstieramklideydflygii
gwhpvdaidfteehlewieslaqhpkvigigemgldyhwdkspadvqkevfrkqialakr
lklpiiihnreatqdcidilleehaeevggimhsfsgspeiadivtnklnfyislggpvt
fknakqpkevakhvsmerllvetdapylsphpyrgkrneparvtlvaeqiaelkglsyee
vceqttknaeklfn