PDB entry 6kyz

View 6kyz on RCSB PDB site
Description: HRV14 3C in complex with single chain antibody YDF
Class: viral protein
Keywords: protease, inhibitor, complex structure, VIRAL PROTEIN
Deposited on 2019-09-20, released 2020-05-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-01, with a file datestamp of 2020-06-26.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Genome polyprotein
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6kyza_
  • Chain 'B':
    Compound: YDF H chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6KYZ
    Domains in SCOPe 2.08: d6kyzb_
  • Chain 'C':
    Compound: YDF L chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6KYZ (0-106)
    Domains in SCOPe 2.08: d6kyzc_
  • Chain 'D':
    Compound: Genome polyprotein
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6kyzd_
  • Chain 'E':
    Compound: YDF H chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6KYZ
    Domains in SCOPe 2.08: d6kyze_
  • Chain 'F':
    Compound: YDF L chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6KYZ (0-106)
    Domains in SCOPe 2.08: d6kyzf_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6kyzA (A:)
gsgpntefalsllrknimtittskgeftglgihdrvcvipthaqpgddvlvngqkirvkd
kyklvdpeninleltvltldrnekfrdirgfisedlegvdatlvvhsnnftntilevgpv
tmaglinlsstptnrmirydyatktgqcggvlcatgkifgihvggngrqgfsaqlkkqyf
vekq

    Sequence, based on observed residues (ATOM records): (download) 
    >6kyzA (A:)
pntefalsllrknimtittskgeftglgihdrvcvipthaqpgddvlvngqkirvkdkyk
lvdpeninleltvltldrnekfrdirgfisedlegvdatlvvhsnnftntilevgpvtma
glinlsstptnrmirydyatktgqcggvlcatgkifgihvggngrqgfsaqlkkqyfvek

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6kyzB (B:)
snmaqvqllqsgggvvqpgrslrlscaasgftfssyamhwvrqapgkglewvavisydgs
nkyyadsvkgrftisrdnskntlylqmnslraedtavyycarvgkggydfwsgsgymdvw
gkgttvtvssggggsggggsggggs

    Sequence, based on observed residues (ATOM records): (download) 
    >6kyzB (B:)
qvqllqsgggvvqpgrslrlscaasgftfssyamhwvrqapgkglewvavisydgsnkyy
adsvkgrftisrdnskntlylqmnslraedtavyycarvgkggydfwsgsgymdvwgkgt
tvtvssg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6kyzC (C:)
syvltqppsvsvspgqtasitcsgdklgdkyacwyqqkpgqspvlviyqdskrpsgiper
fsgsnsgntatltisgtqamdeadyycqawdsstvvfgggtkltvlg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6kyzD (D:)
gsgpntefalsllrknimtittskgeftglgihdrvcvipthaqpgddvlvngqkirvkd
kyklvdpeninleltvltldrnekfrdirgfisedlegvdatlvvhsnnftntilevgpv
tmaglinlsstptnrmirydyatktgqcggvlcatgkifgihvggngrqgfsaqlkkqyf
vekq

    Sequence, based on observed residues (ATOM records): (download) 
    >6kyzD (D:)
falsllrknimtittskgeftglgihdrvcvipthaqpgddvlvngqkirvkdkyklvdp
eninleltvltldrnekfrdirgfisedlegvdatlvvhsnnftntilevgpvtmaglin
lsstptnrmirydyatktgqcggvlcatgkifgihvggngrqgfsaqlkkqyfvek

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6kyzE (E:)
snmaqvqllqsgggvvqpgrslrlscaasgftfssyamhwvrqapgkglewvavisydgs
nkyyadsvkgrftisrdnskntlylqmnslraedtavyycarvgkggydfwsgsgymdvw
gkgttvtvssggggsggggsggggs

    Sequence, based on observed residues (ATOM records): (download) 
    >6kyzE (E:)
qvqllqsgggvvqpgrslrlscaasgftfssyamhwvrqapgkglewvavisydgsnkyy
adsvkgrftisrdnskntlylqmnslraedtavyycarvgkggydfwsgsgymdvwgkgt
tvtvssg

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6kyzF (F:)
syvltqppsvsvspgqtasitcsgdklgdkyacwyqqkpgqspvlviyqdskrpsgiper
fsgsnsgntatltisgtqamdeadyycqawdsstvvfgggtkltvlg