PDB entry 6kxr

View 6kxr on RCSB PDB site
Description: Crystal structure of wild type Alp1U from the biosynthesis of kinamycins
Class: hydrolase
Keywords: Hydrolyse epoxide, Cis-vicinal diol, HYDROLASE
Deposited on 2019-09-12, released 2020-09-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-12-30, with a file datestamp of 2020-12-25.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative hydrolase
    Species: Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516) [TaxId:278992]
    Gene: SAMT0137, SAMT0138
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6kxra_
  • Chain 'B':
    Compound: Putative hydrolase
    Species: Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516) [TaxId:278992]
    Gene: SAMT0137, SAMT0138
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6kxrb_
  • Chain 'C':
    Compound: Putative hydrolase
    Species: Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516) [TaxId:278992]
    Gene: SAMT0137, SAMT0138
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6kxrc_
  • Chain 'D':
    Compound: Putative hydrolase
    Species: Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516) [TaxId:278992]
    Gene: SAMT0137, SAMT0138
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6kxrd_
  • Heterogens: MLT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6kxrA (A:)
mgsshhhhhhssglvprgshmlalgtgatalavtgspaaahpgphpgpvpsdrelarslp
ggfrsrharvggvrlhyvsgghgeplllvpgwpqtwwayrkvmpqlarryhviavdlrgm
ggsdkpaggydkktmaadlhalvrglghrqvnvaghdigsmvafafaanhpeatrkvall
dtphpdqseyemrilcrpgtgttlwwwafnqlqalpeqlmhgrmrhvidwlyansladqs
lvgdldrdiyanaynspqavragtrwyqachqditdqagygkltmpvlgiggnftfedlr
nkltaqatdvhmvrasksvhylpeeepdvvagalldffg

    Sequence, based on observed residues (ATOM records): (download) 
    >6kxrA (A:)
gpvpsdrelarslpggfrsrharvggvrlhyvsgghgeplllvpgwpqtwwayrkvmpql
arryhviavdlrgmggsdkpaggydkktmaadlhalvrglghrqvnvaghdigsmvafaf
aanhpeatrkvalldtphpdqseyemrilcrpgtgttlwwwafnqlqalpeqlmhgrmrh
vidwlyansladqslvgdldrdiyanaynspqavragtrwyqachqditdqagygkltmp
vlgiggnftfedlrnkltaqatdvhmvrasksvhylpeeepdvvagalldffg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6kxrB (B:)
mgsshhhhhhssglvprgshmlalgtgatalavtgspaaahpgphpgpvpsdrelarslp
ggfrsrharvggvrlhyvsgghgeplllvpgwpqtwwayrkvmpqlarryhviavdlrgm
ggsdkpaggydkktmaadlhalvrglghrqvnvaghdigsmvafafaanhpeatrkvall
dtphpdqseyemrilcrpgtgttlwwwafnqlqalpeqlmhgrmrhvidwlyansladqs
lvgdldrdiyanaynspqavragtrwyqachqditdqagygkltmpvlgiggnftfedlr
nkltaqatdvhmvrasksvhylpeeepdvvagalldffg

    Sequence, based on observed residues (ATOM records): (download) 
    >6kxrB (B:)
gpvpsdrelarslpggfrsrharvggvrlhyvsgghgeplllvpgwpqtwwayrkvmpql
arryhviavdlrgmggsdkpaggydkktmaadlhalvrglghrqvnvaghdigsmvafaf
aanhpeatrkvalldtphpdqseyemrilcrpgtgttlwwwafnqlqalpeqlmhgrmrh
vidwlyansladqslvgdldrdiyanaynspqavragtrwyqachqditdqagygkltmp
vlgiggnftfedlrnkltaqatdvhmvrasksvhylpeeepdvvagalldffg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6kxrC (C:)
mgsshhhhhhssglvprgshmlalgtgatalavtgspaaahpgphpgpvpsdrelarslp
ggfrsrharvggvrlhyvsgghgeplllvpgwpqtwwayrkvmpqlarryhviavdlrgm
ggsdkpaggydkktmaadlhalvrglghrqvnvaghdigsmvafafaanhpeatrkvall
dtphpdqseyemrilcrpgtgttlwwwafnqlqalpeqlmhgrmrhvidwlyansladqs
lvgdldrdiyanaynspqavragtrwyqachqditdqagygkltmpvlgiggnftfedlr
nkltaqatdvhmvrasksvhylpeeepdvvagalldffg

    Sequence, based on observed residues (ATOM records): (download) 
    >6kxrC (C:)
gpvpsdrelarslpggfrsrharvggvrlhyvsgghgeplllvpgwpqtwwayrkvmpql
arryhviavdlrgmggsdkpaggydkktmaadlhalvrglghrqvnvaghdigsmvafaf
aanhpeatrkvalldtphpdqseyemrilcrpgtgttlwwwafnqlqalpeqlmhgrmrh
vidwlyansladqslvgdldrdiyanaynspqavragtrwyqachqditdqagygkltmp
vlgiggnftfedlrnkltaqatdvhmvrasksvhylpeeepdvvagalldff

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6kxrD (D:)
mgsshhhhhhssglvprgshmlalgtgatalavtgspaaahpgphpgpvpsdrelarslp
ggfrsrharvggvrlhyvsgghgeplllvpgwpqtwwayrkvmpqlarryhviavdlrgm
ggsdkpaggydkktmaadlhalvrglghrqvnvaghdigsmvafafaanhpeatrkvall
dtphpdqseyemrilcrpgtgttlwwwafnqlqalpeqlmhgrmrhvidwlyansladqs
lvgdldrdiyanaynspqavragtrwyqachqditdqagygkltmpvlgiggnftfedlr
nkltaqatdvhmvrasksvhylpeeepdvvagalldffg

    Sequence, based on observed residues (ATOM records): (download) 
    >6kxrD (D:)
gpvpsdrelarslpggfrsrharvggvrlhyvsgghgeplllvpgwpqtwwayrkvmpql
arryhviavdlrgmggsdkpaggydkktmaadlhalvrglghrqvnvaghdigsmvafaf
aanhpeatrkvalldtphpdqseyemrilcrpgtgttlwwwafnqlqalpeqlmhgrmrh
vidwlyansladqslvgdldrdiyanaynspqavragtrwyqachqditdqagygkltmp
vlgiggnftfedlrnkltaqatdvhmvrasksvhylpeeepdvvagalldff