PDB entry 6kvm

View 6kvm on RCSB PDB site
Description: Crystal structure of Chicken MHC Class II for 1.9 angstrom
Class: immune system
Keywords: Complex crystal structure MHC class II chicken evolution, IMMUNE SYSTEM
Deposited on 2019-09-04, released 2019-12-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-08, with a file datestamp of 2020-07-03.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class II alpha chain
    Species: Gallus gallus [TaxId:9031]
    Gene: B-LA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6kvma1, d6kvma2
  • Chain 'B':
    Compound: MHC class II beta chain 2
    Species: Gallus gallus [TaxId:9031]
    Gene: B-LB, BLB2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6kvmb1, d6kvmb2
  • Chain 'C':
    Compound: peptide from 60S ribosomal protein L30
    Species: Gallus gallus [TaxId:9031]
    Gene: RPL30
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6kvmA (A:)
lkphvllqaefyqrsegpdkawaqfgfhfdadelfhveldaaqtvwrlpefgrfasfeaq
galqnmavgkqnlevmisnsnrsqqdfvtpelalfpaeavsleepnvlicyadkfwppva
tmewrrngavvsegvydsvyygrpdllfrkfsylpfvpqrgdvyscavrhwgaegpvqrm
wepevpeppsessa

    Sequence, based on observed residues (ATOM records): (download) 
    >6kvmA (A:)
lkphvllqaefyqrsegpdkawaqfgfhfdadelfhveldaaqtvwrlpefgrfasfeaq
galqnmavgkqnlevmisnsnrsqqdfvtpelalfpaeavsleepnvlicyadkfwppva
tmewrrngavvsegvydsvyygrpdllfrkfsylpfvpqrgdvyscavrhwgaegpvqrm
wepe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6kvmB (B:)
sgggslvprgsggggstrpsafffcgaisechylngtervrylqryiynrqqyahfdsdv
gkfvadsplgepqaeywnsnaellenrmnevdrfcrhnyggvesftvqrsvepkvrvsal
qsgslpetdrlacyvtgfyppeievkwflngreetervvstdvmqngdwtyqvlvvletv
prrgdsyvcrvehaslrqpisqaweppadagrsk

    Sequence, based on observed residues (ATOM records): (download) 
    >6kvmB (B:)
rpsafffcgaisechylngtervrylqryiynrqqyahfdsdvgkfvadsplgepqaeyw
nsnaellenrmnevdrfcrhnyggvesftvqrsvepkvrvsarlacyvtgfyppeievkw
flngreetervvstdvmqngdwtyqvlvvletvprrgdsyvcrvehaslrqpisqawep

  • Chain 'C':
    No sequence available.