PDB entry 6kss

View 6kss on RCSB PDB site
Description: rat glud1 receptor(compact conformation) in complex with 7-cka and calcium ions
Deposited on 2019-08-26, released 2020-01-15
The last revision was dated 2020-01-29, with a file datestamp of 2020-01-24.
Experiment type: EM
Resolution: 8.1 Å
R-factor: N/A
AEROSPACI score: -0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor ionotropic, delta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grid1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Glutamate receptor ionotropic, delta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grid1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Glutamate receptor ionotropic, delta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grid1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Glutamate receptor ionotropic, delta-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grid1
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6kssA (A:)
dsiihigaifeenaakddrvfqlavsdlslnddilqsekitysikvieannpfqavqeac
dlmtqgilalvtstgcasanalqsltdamhiphlfvqrnpggsprtachlnpspdgeayt
lasrppvrlndvmlrlvtelrwqkfvmfydseydirglqsfldqasrlgldvslqkvdkn
ishvftslfttmkteelnryrdtlrrailllspqgahsfineavetnlaskdshwvfvne
eisdpeildlvhsalgrmtvvrqifpsakdnqkcmrnnhrissllcdpqegylqmlqisn
lylydsvlmlanafhrkledrkwhsmaslncirkstkpwnggrsmldtikkghitgltgv
mefredssnpyvqfeilgttysetfgkdmrklatwdsekglngslqerpmgsrlqgltlk
vvtvleepfvmvaenilgqpkrykgfsidvldalakalgfkyeiyqapdgryghqlhnts
wngmigeliskradlaisaititperesvvdfskrymdysvgilikkpeekisifslfap
fdfavwaciaaaipvvgvlifvlnriqavrsqsatqprpsasatlhsaiwivygafvqqg
gessvnsvamrivmgswwlftlivcssytanlaafltvsrmdspvrtfqdlskqlemsyg
tvrdsavyeyfrakgtnpleqdstfaelwrtisknggadncvsnpsegirkakkgnyafl
wdvavveyaaltdddcsvtvignsisskgygialqhgspyrdlfsqrilelqdtgdldvl
kqkwwphtgrcdltshssaqtdgkslklhsfagvfcilaiglllaclvaalelwwnsnrc
hqetpkedkevglvpr

    Sequence, based on observed residues (ATOM records):
    >6kssA (A:)
siihigaifeenaakddrvfqlavsdlslnddilqsekitysikvieannpfqavqeacd
lmtqgilalvtstgcasanalqsltdamhiphlfvqrnpggsprtachlnpspdgeaytl
asrppvrlndvmlrlvtelrwqkfvmfydseydirglqsfldqasrlgldvslqkvdkni
shvftslfttmkteelnryrdtlrrailllspqgahsfineavetnlaskdshwvfvnee
isdpeildlvhsalgrmtvvrqifpsakdnqkcmrnnhrissllcdpqegylqmlqisnl
ylydsvlmlanafhrkledrkwhsmaslncirkstkpwnggrsmldtikkghitgltgvm
efredssnpyvqfeilgttysetfgkdmrklatwdsekglngslltlkvvtvleepfvmv
aenilgqpkrykgfsidvldalakalgfkyeiyqapdgryghqlhntswngmigeliskr
adlaisaititperesvvdfskrymdysvgilikkisifslfapfdfavwaciaaaipvv
gvlifamrivmgswwlftlivcssytanlaafltpvrtfqdlskqlemsygtvrdsavye
yfrakgtnpleqdstfaelwrtisknggadncvsnpsegirkakkgnyaflwdvavveya
altdddcsvtvignsisskgygialqhgspyrdlfsqrilelqdtgdldvlkqkwwphtg
rcdlsfagvfcilaiglllaclvaalelwwnsn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6kssB (B:)
dsiihigaifeenaakddrvfqlavsdlslnddilqsekitysikvieannpfqavqeac
dlmtqgilalvtstgcasanalqsltdamhiphlfvqrnpggsprtachlnpspdgeayt
lasrppvrlndvmlrlvtelrwqkfvmfydseydirglqsfldqasrlgldvslqkvdkn
ishvftslfttmkteelnryrdtlrrailllspqgahsfineavetnlaskdshwvfvne
eisdpeildlvhsalgrmtvvrqifpsakdnqkcmrnnhrissllcdpqegylqmlqisn
lylydsvlmlanafhrkledrkwhsmaslncirkstkpwnggrsmldtikkghitgltgv
mefredssnpyvqfeilgttysetfgkdmrklatwdsekglngslqerpmgsrlqgltlk
vvtvleepfvmvaenilgqpkrykgfsidvldalakalgfkyeiyqapdgryghqlhnts
wngmigeliskradlaisaititperesvvdfskrymdysvgilikkpeekisifslfap
fdfavwaciaaaipvvgvlifvlnriqavrsqsatqprpsasatlhsaiwivygafvqqg
gessvnsvamrivmgswwlftlivcssytanlaafltvsrmdspvrtfqdlskqlemsyg
tvrdsavyeyfrakgtnpleqdstfaelwrtisknggadncvsnpsegirkakkgnyafl
wdvavveyaaltdddcsvtvignsisskgygialqhgspyrdlfsqrilelqdtgdldvl
kqkwwphtgrcdltshssaqtdgkslklhsfagvfcilaiglllaclvaalelwwnsnrc
hqetpkedkevglvpr

    Sequence, based on observed residues (ATOM records):
    >6kssB (B:)
siihigaifeenaakddrvfqlavsdlslnddilqsekitysikvieannpfqavqeacd
lmtqgilalvtstgcasanalqsltdamhiphlfvqrnpggsprtachlnpspdgeaytl
asrppvrlndvmlrlvtelrwqkfvmfydseydirglqsfldqasrlgldvslqkvdkni
shvftslfttmkteelnryrdtlrrailllspqgahsfineavetnlaskdshwvfvnee
isdpeildlvhsalgrmtvvrqifpsakdnqkcmrnnhrissllcdpqegylqmlqisnl
ylydsvlmlanafhrkledrkwhsmaslncirkstkpwnggrsmldtikkghitgltgvm
efredssnpyvqfeilgttysetfgkdmrklatwdsekglngslltlkvvtvleepfvmv
aenilgqpkrykgfsidvldalakalgfkyeiyqapdgryghqlhntswngmigeliskr
adlaisaititperesvvdfskrymdysvgilikkisifslfapfdfavwaciaaaipvv
gvlifamrivmgswwlftlivcssytanlaafltpvrtfqdlskqlemsygtvrdsavye
yfrakgtnpleqdstfaelwrtisknggadncvsnpsegirkakkgnyaflwdvavveya
altdddcsvtvignsisskgygialqhgspyrdlfsqrilelqdtgdldvlkqkwwphtg
rcdlsfagvfcilaiglllaclvaalelwwnsn

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6kssC (C:)
dsiihigaifeenaakddrvfqlavsdlslnddilqsekitysikvieannpfqavqeac
dlmtqgilalvtstgcasanalqsltdamhiphlfvqrnpggsprtachlnpspdgeayt
lasrppvrlndvmlrlvtelrwqkfvmfydseydirglqsfldqasrlgldvslqkvdkn
ishvftslfttmkteelnryrdtlrrailllspqgahsfineavetnlaskdshwvfvne
eisdpeildlvhsalgrmtvvrqifpsakdnqkcmrnnhrissllcdpqegylqmlqisn
lylydsvlmlanafhrkledrkwhsmaslncirkstkpwnggrsmldtikkghitgltgv
mefredssnpyvqfeilgttysetfgkdmrklatwdsekglngslqerpmgsrlqgltlk
vvtvleepfvmvaenilgqpkrykgfsidvldalakalgfkyeiyqapdgryghqlhnts
wngmigeliskradlaisaititperesvvdfskrymdysvgilikkpeekisifslfap
fdfavwaciaaaipvvgvlifvlnriqavrsqsatqprpsasatlhsaiwivygafvqqg
gessvnsvamrivmgswwlftlivcssytanlaafltvsrmdspvrtfqdlskqlemsyg
tvrdsavyeyfrakgtnpleqdstfaelwrtisknggadncvsnpsegirkakkgnyafl
wdvavveyaaltdddcsvtvignsisskgygialqhgspyrdlfsqrilelqdtgdldvl
kqkwwphtgrcdltshssaqtdgkslklhsfagvfcilaiglllaclvaalelwwnsnrc
hqetpkedkevglvpr

    Sequence, based on observed residues (ATOM records):
    >6kssC (C:)
siihigaifeenaakddrvfqlavsdlslnddilqsekitysikvieannpfqavqeacd
lmtqgilalvtstgcasanalqsltdamhiphlfvqrnpggsprtachlnpspdgeaytl
asrppvrlndvmlrlvtelrwqkfvmfydseydirglqsfldqasrlgldvslqkvdkni
shvftslfttmkteelnryrdtlrrailllspqgahsfineavetnlaskdshwvfvnee
isdpeildlvhsalgrmtvvrqifpsakdnqkcmrnnhrissllcdpqegylqmlqisnl
ylydsvlmlanafhrkledrkwhsmaslncirkstkpwnggrsmldtikkghitgltgvm
efredssnpyvqfeilgttysetfgkdmrklatwdsekglngslltlkvvtvleepfvmv
aenilgqpkrykgfsidvldalakalgfkyeiyqapdgryghqlhntswngmigeliskr
adlaisaititperesvvdfskrymdysvgilikkisifslfapfdfavwaciaaaipvv
gvlifamrivmgswwlftlivcssytanlaafltpvrtfqdlskqlemsygtvrdsavye
yfrakgtnpleqdstfaelwrtisknggadncvsnpsegirkakkgnyaflwdvavveya
altdddcsvtvignsisskgygialqhgspyrdlfsqrilelqdtgdldvlkqkwwphtg
rcdlsfagvfcilaiglllaclvaalelwwnsn

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6kssD (D:)
dsiihigaifeenaakddrvfqlavsdlslnddilqsekitysikvieannpfqavqeac
dlmtqgilalvtstgcasanalqsltdamhiphlfvqrnpggsprtachlnpspdgeayt
lasrppvrlndvmlrlvtelrwqkfvmfydseydirglqsfldqasrlgldvslqkvdkn
ishvftslfttmkteelnryrdtlrrailllspqgahsfineavetnlaskdshwvfvne
eisdpeildlvhsalgrmtvvrqifpsakdnqkcmrnnhrissllcdpqegylqmlqisn
lylydsvlmlanafhrkledrkwhsmaslncirkstkpwnggrsmldtikkghitgltgv
mefredssnpyvqfeilgttysetfgkdmrklatwdsekglngslqerpmgsrlqgltlk
vvtvleepfvmvaenilgqpkrykgfsidvldalakalgfkyeiyqapdgryghqlhnts
wngmigeliskradlaisaititperesvvdfskrymdysvgilikkpeekisifslfap
fdfavwaciaaaipvvgvlifvlnriqavrsqsatqprpsasatlhsaiwivygafvqqg
gessvnsvamrivmgswwlftlivcssytanlaafltvsrmdspvrtfqdlskqlemsyg
tvrdsavyeyfrakgtnpleqdstfaelwrtisknggadncvsnpsegirkakkgnyafl
wdvavveyaaltdddcsvtvignsisskgygialqhgspyrdlfsqrilelqdtgdldvl
kqkwwphtgrcdltshssaqtdgkslklhsfagvfcilaiglllaclvaalelwwnsnrc
hqetpkedkevglvpr

    Sequence, based on observed residues (ATOM records):
    >6kssD (D:)
siihigaifeenaakddrvfqlavsdlslnddilqsekitysikvieannpfqavqeacd
lmtqgilalvtstgcasanalqsltdamhiphlfvqrnpggsprtachlnpspdgeaytl
asrppvrlndvmlrlvtelrwqkfvmfydseydirglqsfldqasrlgldvslqkvdkni
shvftslfttmkteelnryrdtlrrailllspqgahsfineavetnlaskdshwvfvnee
isdpeildlvhsalgrmtvvrqifpsakdnqkcmrnnhrissllcdpqegylqmlqisnl
ylydsvlmlanafhrkledrkwhsmaslncirkstkpwnggrsmldtikkghitgltgvm
efredssnpyvqfeilgttysetfgkdmrklatwdsekglngslltlkvvtvleepfvmv
aenilgqpkrykgfsidvldalakalgfkyeiyqapdgryghqlhntswngmigeliskr
adlaisaititperesvvdfskrymdysvgilikkisifslfapfdfavwaciaaaipvv
gvlifamrivmgswwlftlivcssytanlaafltpvrtfqdlskqlemsygtvrdsavye
yfrakgtnpleqdstfaelwrtisknggadncvsnpsegirkakkgnyaflwdvavveya
altdddcsvtvignsisskgygialqhgspyrdlfsqrilelqdtgdldvlkqkwwphtg
rcdlsfagvfcilaiglllaclvaalelwwnsn