PDB entry 6kj6

View 6kj6 on RCSB PDB site
Description: cryo-em structure of escherichia coli crl transcription activation complex
Deposited on 2019-07-21, released 2020-01-01
The last revision was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: rpoA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: rpoA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA-directed RNA polymerase subunit beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: rpoB
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA-directed RNA polymerase subunit beta'
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: rpoC, tabB, b3988, JW3951
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA-directed RNA polymerase subunit omega
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: rpoZ
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: RNA polymerase sigma factor RpoS
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: rpoS, appR, katF, nur, otsX, sigS, b2741, JW5437
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: DNA (51-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: DNA (51-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'I':
    Compound: RNA (5'-r(*cp*up*cp*gp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'J':
    Compound: Sigma factor-binding protein Crl
    Species: Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) [TaxId:481805]
    Gene: crl, EcolC_3341
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6kj6A (A:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6kj6A (A:)
    flkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlhe
    ystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpq
    hvichltdenasismrikvqrgrgyvparpigrllvdacyspveriaynveaarveqrtd
    ldklviemetngtidpeeairraatilaeqleafvdlr
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6kj6B (B:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6kj6B (B:)
    teflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvl
    heystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivk
    pqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriay
    nveaarveqrtdldklviemetngtidpeeairraatilaeqleafv
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6kj6C (C:)
    mvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiq
    sysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeq
    evymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyr
    gswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqme
    lvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakd
    yidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrl
    salveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgil
    skddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerls
    lgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltr
    eragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvt
    deihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqv
    vsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakr
    ggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepverg
    dvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvs
    rdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeek
    llraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdl
    seelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqyde
    lkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskin
    piedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevak
    lrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellk
    lgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplg
    gkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmp
    esfnvllkeirslginielede
    

    Sequence, based on observed residues (ATOM records):
    >6kj6C (C:)
    vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqs
    ysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyikeqevymgeiplmtd
    ngtfvingtervivsqlhrspgvffdsdkgkthskvlynariipyrgswldfefdpkdnl
    fvridrrrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfd
    ieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaan
    melsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmrpge
    pptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgilskddiidvmkklid
    irngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlslgdldtlmpqdmin
    akpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltreragfevrdvhpth
    ygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegny
    viaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehd
    danralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivi
    kvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgel
    algqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadi
    pnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraifgekasdvk
    dsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsr
    iravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrr
    kitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpv
    divlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgad
    vrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlyd
    grtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgeme
    vwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslg
    inieled
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6kj6D (D:)
    mkdllkflkaqtkteefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcar
    ifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflksl
    psrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakm
    gaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmilt
    vlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlq
    eavdalldngrrgraitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpy
    lrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehp
    vllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlea
    ralmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsg
    laslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkka
    iskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeae
    vaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfn
    siymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgar
    kgladtalktansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvl
    grvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcyg
    rdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsikl
    snvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanw
    dphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalki
    vdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglpr
    vadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfe
    gervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqm
    lrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfi
    saasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraageapa
    apqvtaedasaslaellnaglggsdnelevhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6kj6D (D:)
    efdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgky
    krlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdi
    ervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdle
    qetkriklnkpewmiltvlpvlppdlrpfatsdlndlyrrvinrnnrlkrlapdiivrne
    krmlqeavdalldnrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcg
    lpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnrap
    tlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmst
    nnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslhar
    vkvriteyeklvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyril
    glkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsge
    rynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaaqi
    rqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalktansgylt
    rrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtadil
    vprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeaigv
    iaaqsigepgtqltmrtaessiqvknkgsiklsnvksvvnssgklvitsrntelklidef
    grtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitr
    qtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivq
    ledgvqissgdtlaripqgglprvadlfearrpkepailaeisgivsfgketkgkrrlvi
    tpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnev
    qdvyrlqgvkindkhievivrqmlrkativflegeqveysrvkianreletysrdllgit
    kaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrm
    rrraa
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6kj6E (E:)
    marvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglin
    nqildvrerqeqqeqeaaelqavtaiaegrr
    

    Sequence, based on observed residues (ATOM records):
    >6kj6E (E:)
    arvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglinn
    qildvrerqeqqeq
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6kj6F (F:)
    gamamsqntlkvhdlnedaefdengvevfdekalveqepsdndlaeeellsqgatqrvld
    atqlylgeigysplltaeeevyfarralrgdvasrrrmiesnlrlvvkiarrygnrglal
    ldlieegnlgliravekfdpergfrfstyatwwirqtieraimnqtrtirlpihivkeln
    vylrtarelshkldhepsaeeiaeqldkpvddvsrmlrlneritsvdtplggdsekalld
    iladekengpedttqdddmkqsivkwlfelnakqrevlarrfgllgyeaatledvgreig
    ltrervrqiqveglrrlreilqtqglniealfre
    

    Sequence, based on observed residues (ATOM records):
    >6kj6F (F:)
    rvldatqlylgeigysplltaeeevyfarralrgdvasrrrmiesnlrlvvkiarrygnr
    glalldlieegnlgliravekfdpergfrfstyatwwirqtieraimnqtrtirlpihiv
    kelnvylrtarelshkldhepsaeeiaeqldkpvddvsrmlrlneritsvdtplggdsek
    alldiladekengpedttqdddmkqsivkwlfelnakqrevlarrfgllgyeaatledvg
    reigltrervrqiqveglrrlreilqtqglniealfr
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6kj6J (J:)
    gamamtlpsghpksrlikkftalgpyiregkcednrfffdclavcvnvkpapevrefwgw
    wmeleaqesrftysyqfglfdkagdwksvpvkdtevverlehtlrefheklrellttlnl
    klepaddfrdepvklta
    

    Sequence, based on observed residues (ATOM records):
    >6kj6J (J:)
    pksrlikkftalgpyiregkcednrfffdclavcvnvkpapevrefwgwwmeleasrfty
    syqfglfdkagdwksvpvkdtevverlehtlrefheklrellttln