PDB entry 6kdi

View 6kdi on RCSB PDB site
Description: antibody 64m-5 fab including isoasp in complex with dt(6-4)t
Deposited on 2019-07-02, released 2019-12-18
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA (5'-d(*(64t)p*(5py))-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6KDI (0-220)
  • Chain 'L':
    Compound: Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6KDI
  • Heterogens: 5PY, 64T, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6kdiH (H:)
evqlqqsgtvlarpgasvkmsckasgytftnywmhwikqrpgqglewigtiypgnsdtty
sqkfkgkakltavtststaymelssltnedsavyycsrrnygssyamdywgqgtsvtvss
akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprd

    Sequence, based on observed residues (ATOM records):
    >6kdiH (H:)
evqlqqsgtvlarpgasvkmsckasgytftnywmhwikqrpgqglewigtiypgnsdtty
sqkfkgkakltavtststaymelssltnedsavyycsrrnygssyamdywgqgtsvtvss
akttppsvyplapgsnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytl
sssvtvpsstwpsetvtcnvahpasstkvdkkivprd

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6kdiL (L:)
dvlmtqtplslpvslgdqasiscrssqnivhsdgytylewylqkpgqspklliytvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgvyycfrgshvptfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records):
    >6kdiL (L:)
vlmtqtplslpvslgdqasiscrssqnivhsgytylewylqkpgqspklliytvsnrfsg
vpdrfsgsgsgtdftlkisrveaedlgvyycfrgshvptfgggtkleikradaaptvsif
ppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsst
ltltkdeyerhnsytceathktstspivksfnrne