PDB entry 6kcq

View 6kcq on RCSB PDB site
Description: crystal structure of yedk with ssdna containing an abasic site
Deposited on 2019-06-28, released 2019-07-10
The last revision was dated 2020-01-22, with a file datestamp of 2020-01-17.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA (5'-d(p*ap*ap*ap*(ped)p*ap*a)-3')
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'B':
    Compound: SOS response-associated protein
    Species: Escherichia coli [TaxId:562]
    Gene: yedK, C4J69_22885, ECTO6_01993, EFV06_12905, EFV16_12155, SAMEA3472108_01185, SAMEA3752559_04370
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PED, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6kcqB (B:)
mcgrfaqsqtredylallaedierdipydpepigrynvapgtkvlllserdehlhldpvf
wgyapgwwdkpplinarvetaatsrmfkplwqhgraicfadgwfewkkegdkkqpffiyr
adgqpifmaaigstpfergdeaegflivtaaadqglvdihdrrplvlspeaarewmrqei
sgkeaseiaasgcvpanqfswhpvsravgnvknqgaeliqpvlevlfq

    Sequence, based on observed residues (ATOM records):
    >6kcqB (B:)
cgrfaqsqtredylallaedierdipydpepigrynvapgtkvlllserdehlhldpvfw
gyapgwwdkpplinarvetaatsrmfkplwqhgraicfadgwfewkkegdkkqpffiyra
dgqpifmaaigstpfergdeaegflivtaaadqglvdihdrrplvlspeaarewmrqeis
gkeaseiaasgcvpanqfswhpvsravgnvknqgaeliqpv