PDB entry 6kbz

View 6kbz on RCSB PDB site
Description: crystal structure of yedk with ssdna containing a tetrahydrofuran abasic site
Deposited on 2019-06-26, released 2019-07-10
The last revision was dated 2020-01-22, with a file datestamp of 2020-01-17.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5'-d (*cp*gp*gp*tp* (3dr) p*gp*ap*tp*tp*c)-3'
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'B':
    Compound: SOS response-associated protein
    Species: Escherichia coli [TaxId:562]
    Gene: yedK, C4J69_22885, ECTO6_01993, EFV06_12905, EFV16_12155, SAMEA3472108_01185, SAMEA3752559_04370
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2S5ZH06 (0-220)
      • expression tag (221-225)
  • Chain 'C':
    Compound: 5'-d (*cp*gp*gp*tp* (3dr) p*gp*ap*tp*tp*c)-3'
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'D':
    Compound: SOS response-associated protein
    Species: Escherichia coli [TaxId:562]
    Gene: yedK, C4J69_22885, ECTO6_01993, EFV06_12905, EFV16_12155, SAMEA3472108_01185, SAMEA3752559_04370
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2S5ZH06 (0-220)
      • expression tag (221-222)
  • Chain 'E':
    Compound: 5'-d (*cp*gp*gp*tp* (3dr) p*gp*ap*tp*tp*c)-3'
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'F':
    Compound: SOS response-associated protein
    Species: Escherichia coli [TaxId:562]
    Gene: yedK, C4J69_22885, ECTO6_01993, EFV06_12905, EFV16_12155, SAMEA3472108_01185, SAMEA3752559_04370
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2S5ZH06 (0-220)
      • expression tag (221-225)
  • Chain 'G':
    Compound: 5'-d (*cp*gp*gp*tp* (3dr) p*gp*ap*tp*tp*c)-3'
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'H':
    Compound: SOS response-associated protein
    Species: Escherichia coli [TaxId:562]
    Gene: yedK, C4J69_22885, ECTO6_01993, EFV06_12905, EFV16_12155, SAMEA3472108_01185, SAMEA3752559_04370
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2S5ZH06 (0-220)
      • expression tag (221-223)
  • Heterogens: MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6kbzB (B:)
cgrfaqsqtredylallaedierdipydpepigrynvapgtkvlllserdehlhldpvfw
gyapgwwdkpplinarvetaatsrmfkplwqhgraicfadgwfewkkegdkkqpffiyra
dgqpifmaaigstpfergdeaegflivtaaadqglvdihdrrplvlspeaarewmrqeis
gkeaseiaasgcvpanqfswhpvsravgnvknqgaeliqpvlevlfq

    Sequence, based on observed residues (ATOM records):
    >6kbzB (B:)
cgrfaqsqtredylallaedierdipydpepigrynvapgtkvlllserdehlhldpvfw
gyapgwwdkpplinarvetaatsrmfkplwqhgraicfadgwfewkkegdkkqpffiyra
dgqpifmaaigstpfergdeaegflivtaaadqglvdihdrrplvlspeaarewmrqeis
gkeaseiaasgcvpanqfswhpvsravgnvknqgaeliqpvlevlf

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6kbzD (D:)
cgrfaqsqtredylallaedierdipydpepigrynvapgtkvlllserdehlhldpvfw
gyapgwwdkpplinarvetaatsrmfkplwqhgraicfadgwfewkkegdkkqpffiyra
dgqpifmaaigstpfergdeaegflivtaaadqglvdihdrrplvlspeaarewmrqeis
gkeaseiaasgcvpanqfswhpvsravgnvknqgaeliqpvlevlfq

    Sequence, based on observed residues (ATOM records):
    >6kbzD (D:)
cgrfaqsqtredylallaedierdipydpepigrynvapgtkvlllserdehlhldpvfw
gyapgwwdkpplinarvetaatsrmfkplwqhgraicfadgwfewkkegdkkqpffiyra
dgqpifmaaigstpfergdeaegflivtaaadqglvdihdrrplvlspeaarewmrqeis
gkeaseiaasgcvpanqfswhpvsravgnvknqgaeliqpvle

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6kbzF (F:)
cgrfaqsqtredylallaedierdipydpepigrynvapgtkvlllserdehlhldpvfw
gyapgwwdkpplinarvetaatsrmfkplwqhgraicfadgwfewkkegdkkqpffiyra
dgqpifmaaigstpfergdeaegflivtaaadqglvdihdrrplvlspeaarewmrqeis
gkeaseiaasgcvpanqfswhpvsravgnvknqgaeliqpvlevlfq

    Sequence, based on observed residues (ATOM records):
    >6kbzF (F:)
cgrfaqsqtredylallaedierdipydpepigrynvapgtkvlllserdehlhldpvfw
gyapgwwdkpplinarvetaatsrmfkplwqhgraicfadgwfewkkegdkkqpffiyra
dgqpifmaaigstpfergdeaegflivtaaadqglvdihdrrplvlspeaarewmrqeis
gkeaseiaasgcvpanqfswhpvsravgnvknqgaeliqpvlevlf

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6kbzH (H:)
cgrfaqsqtredylallaedierdipydpepigrynvapgtkvlllserdehlhldpvfw
gyapgwwdkpplinarvetaatsrmfkplwqhgraicfadgwfewkkegdkkqpffiyra
dgqpifmaaigstpfergdeaegflivtaaadqglvdihdrrplvlspeaarewmrqeis
gkeaseiaasgcvpanqfswhpvsravgnvknqgaeliqpvlevlfq

    Sequence, based on observed residues (ATOM records):
    >6kbzH (H:)
cgrfaqsqtredylallardipydpepigrynvapgtkvlllserdehlhldpvfwgyap
gwwdkpplinarvetaatsrmfkplwqhgraicfadgwfewkkegdkkqpffiyradgqp
ifmaaigstpfergdeaegflivtaaadqglvdihdrrplvlspeaarewmrqeisgkea
seiaasgcvpanqfswhpvsravgnvknqgaeliqpvlev