PDB entry 6kbf

View 6kbf on RCSB PDB site
Description: Crystal structure of plasmodium lysyl-tRNA synthetase in complex with a cladosporin derivative 3
Class: ligase
Keywords: Inhibitor, Complex, LIGASE
Deposited on 2019-06-24, released 2020-04-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-05-06, with a file datestamp of 2020-05-01.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lysine--tRNA ligase
    Species: Plasmodium falciparum (isolate NF54) [TaxId:5843]
    Gene: PFNF54_04763
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6kbfa1, d6kbfa2
  • Chain 'B':
    Compound: Lysine--tRNA ligase
    Species: Plasmodium falciparum (isolate NF54) [TaxId:5843]
    Gene: PFNF54_04763
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6kbfb1, d6kbfb2
  • Heterogens: D4X, LYS, GOL, DMS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6kbfA (A:)
mevdprlyfenrskfiqdqkdkginpyphkfertisipefiekykdlgngehledtilni
tgrimrvsasgqklrffdlvgdgekiqvlanysfhnhekgnfaecydkirrgdivgivgf
pgkskkgelsifpketillsaclhmlpmkyglkdteiryrqryldllinessrhtfvtrt
kiinflrnflnergffevetpmmnliagganarpfithhndldldlylriatelplkmli
vggidkvyeigkvfrnegidnthnpeftscefywayadyndlikwsedffsqlvyhlfgt
ykisynkdgpenqpieidftppypkvsiveeiekvtntileqpfdsnetiekminiikeh
kielpnpptaaklldqlashfienkyndkpffivehpqimsplakyhrtkpglterlemf
icgkevlnaytelndpfkqkecfklqqkdrekgdteaaqldsafctsleyglpptgglgl
gidritmfltnknsikdvilfptmrpangghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6kbfA (A:)
dprlyfenrskfiqdqkdkginpyphkfertisipefiekykdlgngehledtilnitgr
imrvsasgqklrffdlvgdgekiqvlanysfhnhekgnfaecydkirrgdivgivgfpgk
skkgelsifpketillsaclhmlpmkyglkdteiryrqryldllinessrhtfvtrtkii
nflrnflnergffevetpmmnliagganarpfithhndldldlylriatelplkmlivgg
idkvyeigkvfrnegidnthnpeftscefywayadyndlikwsedffsqlvyhlfgtyki
synkdgpenqpieidftppypkvsiveeiekvtntileqpfdsnetiekminiikehkie
lpnpptaaklldqlashfienkyndkpffivehpqimsplakyhrtkpglterlemficg
kevlnaytelndpfkqkecfklqqkdrekgdteaaqldsafctsleyglpptgglglgid
ritmfltnknsikdvilfptmrpa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6kbfB (B:)
mevdprlyfenrskfiqdqkdkginpyphkfertisipefiekykdlgngehledtilni
tgrimrvsasgqklrffdlvgdgekiqvlanysfhnhekgnfaecydkirrgdivgivgf
pgkskkgelsifpketillsaclhmlpmkyglkdteiryrqryldllinessrhtfvtrt
kiinflrnflnergffevetpmmnliagganarpfithhndldldlylriatelplkmli
vggidkvyeigkvfrnegidnthnpeftscefywayadyndlikwsedffsqlvyhlfgt
ykisynkdgpenqpieidftppypkvsiveeiekvtntileqpfdsnetiekminiikeh
kielpnpptaaklldqlashfienkyndkpffivehpqimsplakyhrtkpglterlemf
icgkevlnaytelndpfkqkecfklqqkdrekgdteaaqldsafctsleyglpptgglgl
gidritmfltnknsikdvilfptmrpangghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6kbfB (B:)
dprlyfenrskfiqdqkdkginpyphkfertisipefiekykdlgngehledtilnitgr
imrvsasgqklrffdlvgdgekiqvlanysfhnhekgnfaecydkirrgdivgivgfpgk
skkgelsifpketillsaclhmlpmkyglkdteiryrqryldllinessrhtfvtrtkii
nflrnflnergffevetpmmnliagganarpfithhndldldlylriatelplkmlivgg
idkvyeigkvfrnegidnthnpeftscefywayadyndlikwsedffsqlvyhlfgtyki
synkdgpenqpieidftppypkvsiveeiekvtntileqpfdsnetiekminiikehkie
lpnpptaaklldqlashfienkyndkpffivehpqimsplakyhrtkpglterlemficg
kevlnaytelndpfkqkecfklqqkdrekgdteaaqldsafctsleyglpptgglglgid
ritmfltnknsikdvilfptmrp