PDB entry 6k8p

View 6k8p on RCSB PDB site
Description: structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete phytophthora capsici.
Deposited on 2019-06-13, released 2019-11-13
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 1.97 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Phytophthora capsici LT1534 [TaxId:763924]
    Gene: up
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Phytophthora capsici LT1534 [TaxId:763924]
    Gene: up
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Uridine phosphorylase
    Species: Phytophthora capsici LT1534 [TaxId:763924]
    Gene: up
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Uridine phosphorylase
    Species: Phytophthora capsici LT1534 [TaxId:763924]
    Gene: up
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PO4, R1P, TDR, THM, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6k8pA (A:)
mgmayqntnampthsdgtvlhlglragqvanrivsvgslgrakvlaqlldeghfetfesa
rgfttysgkvkgvpvsivatgmgvpnmdfvvretravvngpmtiirfgtcgavreevppg
svvvngkgsimvtrnpdaffpgaseedcyrvsrvmpssstlskalvasmedkltalraep
viaassdcdalrvfdglnatacsfyssqgrldsnfddrneklvedlttahpdlytvemet
fhlldlaqrsrgsiqataavlvvanrlsgqivesevlealesfwggvvlqtivstpldaa
alehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6k8pA (A:)
ayqntnampthsdgtvlhlglragqvanrivsvgslgrakvlaqlldeghfetfesargf
ttysgkvkgvpvsivatgmgvpnmdfvvretravvngpmtiirfgtcgavreevppgsvv
vngkgsimvtrnpdaffpgaseedcyrvsrvmpssstlskalvasmedkltalraepvia
assdcdalrvfdglnatacsfyssqgrldsnfddrneklvedlttahpdlytvemetfhl
ldlaqrsrgsiqataavlvvanrlsgqivesevlealesfwggvvlqtivstpl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6k8pB (B:)
mgmayqntnampthsdgtvlhlglragqvanrivsvgslgrakvlaqlldeghfetfesa
rgfttysgkvkgvpvsivatgmgvpnmdfvvretravvngpmtiirfgtcgavreevppg
svvvngkgsimvtrnpdaffpgaseedcyrvsrvmpssstlskalvasmedkltalraep
viaassdcdalrvfdglnatacsfyssqgrldsnfddrneklvedlttahpdlytvemet
fhlldlaqrsrgsiqataavlvvanrlsgqivesevlealesfwggvvlqtivstpldaa
alehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6k8pB (B:)
tvlhlglragqvanrivsvgslgrakvlaqlldeghfetfesargfttysgkvkgvpvsi
vatgmgvpnmdfvvretravvngpmtiirfgtcgavreevppgsvvvngkgsimvtrnpd
affpgaseedcyrvsrvmpssstlskalvasmedkltalraepviaassdcdalrvfdgl
natacsfyssqgrldsnfddrneklvedlttahpdlytvemetfhlldlaqrsrgsiqat
aavlvvanrlsgqivesevlealesfwggvvlqtivstpl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6k8pC (C:)
mgmayqntnampthsdgtvlhlglragqvanrivsvgslgrakvlaqlldeghfetfesa
rgfttysgkvkgvpvsivatgmgvpnmdfvvretravvngpmtiirfgtcgavreevppg
svvvngkgsimvtrnpdaffpgaseedcyrvsrvmpssstlskalvasmedkltalraep
viaassdcdalrvfdglnatacsfyssqgrldsnfddrneklvedlttahpdlytvemet
fhlldlaqrsrgsiqataavlvvanrlsgqivesevlealesfwggvvlqtivstpldaa
alehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6k8pC (C:)
ayqntnampthsdgtvlhlglragqvanrivsvgslgrakvlaqlldeghfetfesargf
ttysgkvkgvpvsivatgmgvpnmdfvvretravvngpmtiirfgtcgavreevppgsvv
vngkgsimvtrnpdaffpgaseedcyrvsrvmpssstlskalvasmedkltalraepvia
assdcdalrvfdglnatacsfyssqgrldsnfddrneklvedlttahpdlytvemetfhl
ldlaqrsrgsiqataavlvvanrlsgqivesevlealesfwggvvlqtivstpl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6k8pD (D:)
mgmayqntnampthsdgtvlhlglragqvanrivsvgslgrakvlaqlldeghfetfesa
rgfttysgkvkgvpvsivatgmgvpnmdfvvretravvngpmtiirfgtcgavreevppg
svvvngkgsimvtrnpdaffpgaseedcyrvsrvmpssstlskalvasmedkltalraep
viaassdcdalrvfdglnatacsfyssqgrldsnfddrneklvedlttahpdlytvemet
fhlldlaqrsrgsiqataavlvvanrlsgqivesevlealesfwggvvlqtivstpldaa
alehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6k8pD (D:)
tvlhlglragqvanrivsvgslgrakvlaqlldeghfetfesargfttysgkvkgvpvsi
vatgmgvpnmdfvvretravvngpmtiirfgtcgavreevppgsvvvngkgsimvtrnpd
affpgaseedcyrvsrvmpssstlskalvasmedkltalraepviaassdcdalrvfdgl
natacsfyssqgrldsnfddrneklvedlttahpdlytvemetfhlldlaqrsrgsiqat
aavlvvanrlsgqivesevlealesfwggvvlqtivstpl