PDB entry 6k7j

View 6k7j on RCSB PDB site
Description: cryo-em structure of the human p4-type flippase atp8a1-cdc50 (e1-atp state class1)
Deposited on 2019-06-07, released 2019-08-28
The last revision was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: EM
Resolution: 3.08 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Phospholipid-transporting ATPase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Cell cycle control protein 50A
    Species: Homo sapiens [TaxId:9606]
    Gene: TMEM30A
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ACP, MAN, MG, NAG, Y01

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6k7jA (A:)
    gsrefmptmrrtvseirsraegyektddvsektsladqeevrtifinqpqltkfcnnhvs
    takyniitflprflysqfrraansfflfiallqqipdvsptgryttlvpllfilavaaik
    eiiedikrhkadnavnkkqtqvlrngaweivhwekvnvgdiviikgkeyipadtvllsss
    epqamcyietsnldgetnlkirqglpatsdikdvdslmrisgriecespnrhlydfvgni
    rldghgtvplgadqillrgaqlrntqwvhgivvytghdtklmqnstspplklsnveritn
    vqililfciliamslvcsvgsaiwnrrhsgkdwylnlnyggasnfglnfltfiilfnnli
    pisllvtlevvkftqayfinwdldmhyeptdtaamartsnlneelgqvkyifsdktgtlt
    cnvmqfkkctiagvaygqnsqfgdektfsdssllenlqnnhptapiicefltmmavchta
    vpererdkiiyqaaspdegalvraakqlnfvftgrtpdsviidslgqeeryellnvleft
    sarkrmsvivrtpsgklrlyckgadtviydrlaetskykeitlkhleqfateglrtlcfa
    vaeisesdfqewravyqrastsvqnrllkleesyelieknlqllgataiedklqdqvpet
    ietlmkadikiwiltgdkqetainighsckllkknmgmivinegsldgtretlsrhcttl
    gdalrkendfaliidgktlkyaltfgvrqyfldlalsckaviccrvsplqksevvemvkk
    qvkvvtlaigdgandvsmiqtahvgvgisgneglqaanssdysiaqfkylknllmihgaw
    nynrvskcilycfyknivlyiieiwfafvngfsgqilferwciglynvmftamppltlgi
    ferscrkenmlkypelyktsqnaldfntkvfwvhclnglfhsvilfwfplkalqygtafg
    ngktsdylllgnfvytfvvitvclkagletsywtwfshiaiwgsialwvvffgiysslwp
    aipmapdmsgeaamlfssgvfwmgllfipvasllldvvykvikrtafktlvdevqeleak
    sqdpgavvlgkslteraqllknvfkknhvnlyrseslqqnllhgyafsqdengivsqsev
    iraydttkqrpdew
    

    Sequence, based on observed residues (ATOM records):
    >6k7jA (A:)
    evrtifinqpqltkfcnnhvstakyniitflprflysqfrraansfflfiallqqipdvs
    ptgryttlvpllfilavaaikeiiedikrhkadnavnkkqtqvlrngaweivhwekvnvg
    diviikgkeyipadtvllsssepqamcyietsnldgetnlkirqglpatsdikdvdslmr
    isgriecespnrhlydfvgnirplgadqillrgaqlrntqwvhgivvytghdtklmqnst
    spplklsnveritnvqililfciliamslvcsvgsaiwnrrhsgkdwylnlnyggasnfg
    lnfltfiilfnnlipisllvtlevvkftqayfinwdldmhyeptdtaamartsnlneelg
    qvkyifsdktgtltcnvmqfkkctiagvaygqnfsdssllenlqnnhptapiicefltmm
    avchtavpererdkiiyqaaspdegalvraakqlnfvftgrtpdsviidslgqeeryell
    nvleftsarkrmsvivrtpsgklrlyckgadtviydrlaetskykeitlkhleqfategl
    rtlcfavaeisesdfqewravyqrastsvqnrllkleesyelieknlqllgataiedklq
    dqvpetietlmkadikiwiltgdkqetainighsckllkknmgmivifaliidgktlkya
    ltfgvrqyfldlalsckaviccrvsplqksevvemvkkqvkvvtlaigdgandvsmiqta
    hvgvgisgneglqaanssdysiaqfkylknllmihgawnynrvskcilycfyknivlyii
    eiwfafvngfsgqilferwciglynvmftamppltlgiferscrkenmlkypelyktsqn
    aldfntkvfwvhclnglfhsvilfwfplkalqygtafgngktsdylllgnfvytfvvitv
    clkagletsywtwfshiaiwgsialwvvffgiysslwpaipmapdmsgeaamlfssgvfw
    mgllfipvasllldvvykvikrtafk
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6k7jC (C:)
    mamnynakdevdggppcapggtaktrrpdntafkqqrlpawqpiltagtvlpiffiigli
    fipigigifvtsnnireieidytgtepsspcnkclspdvtpcfctinftleksfegnvfm
    yyglsnfyqnhrryvksrddsqlngdssallnpskecepyrrnedkpiapcgaiansmfn
    dtlelfligndsypipialkkkgiawwtdknvkfrnppggdnleerfkgttkpvnwlkpv
    ymldsdpdnngfinedfivwmrtaalptfrklyrlierksdlhptlpagryslnvtynyp
    vhyfdgrkrmilstiswmggknpflgiayiavgsisfllgvvllvinhkyrnssntadit
    i
    

    Sequence, based on observed residues (ATOM records):
    >6k7jC (C:)
    rpdntafkqqrlpawqpiltagtvlpiffiiglifipigigifvtsnnireieidytgte
    psspcnkclspdvtpcfctinftleksfegnvfmyyglsnfyqnhrryvksrddsqlngd
    ssallnpskecepyrrnedkpiapcgaiansmfndtlelfligndsypipialkkkgiaw
    wtdknvkfrnppggdnleerfkgttkpvnwlkpvymldsdpdnngfinedfivwmrtaal
    ptfrklyrlierksdlhptlpagryslnvtynypvhyfdgrkrmilstiswmggknpflg
    iayiavgsisfllgvvllvinhkyr