PDB entry 6k76

View 6k76 on RCSB PDB site
Description: Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.
Class: transferase
Keywords: Glycerol, Kinase, ATP, Archaea, TRANSFERASE
Deposited on 2019-06-06, released 2020-06-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-06-10, with a file datestamp of 2020-06-05.
Experiment type: XRAY
Resolution: 3.05 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycerol kinase
    Species: Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) [TaxId:69014]
    Gene: glpK, TK1396
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6k76a1, d6k76a2
  • Chain 'B':
    Compound: glycerol kinase
    Species: Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) [TaxId:69014]
    Gene: glpK, TK1396
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6k76b1, d6k76b2
  • Heterogens: ANP

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6k76A (A:)
mekfvlsldegttsaraiifdresnihgigqyefpqhyprpgwvehnpeeiwdaqlraik
daiqsariepnqiaaigvtnqrettlvwdkdgkplynaivwqcrrtaemveeikreygtm
ikektglvpdayfsasklkwlldnvpglrekaekgevmfgtvdtfliyrltgehvtdysn
asrtmlfnikkldwddellelfdipesvlpevressevygytkkellgaeipvsgdagdq
qaalfgqaafeagmvkatygtgsfilvntdkmvlysdnllttiawglngrvsyalegsif
vtgaavqwlrdgikiikhaseteelatklesnegvyfvpafvglgapywdqfargiiigi
trgtgrehlaratleaiayltrdvvdemeklvqikelrvdggatandflmqfqadilnrk
virpvvkettalgaaylaglavdywadtreiaelwkaerifepkmdektrerlykgwkea
vkramgwakvvdsaksn

    Sequence, based on observed residues (ATOM records): (download) 
    >6k76A (A:)
vlsldegttsaraiifdresnihgigqyefpqhyprpgwvehnpeeiwdaqlraikdaiq
sarepnqiaaigvtnqrettlvwdkdgkplynaivwqcrrtaemveeikreygtmikekt
glvpdayfsasklkwlldnvpglrekaekgevmfgtvdtfliyrltgehvtdysnasrtm
lfnikkldwddellelfdipesvlpevressevygytkkelaeipvsgdagdqqaalfgq
aafeagmvkatygtgsfilvntdkmvlysdnllttiawglngrvsyalegsifvtgaavq
wlrdgikiikhaseteelatklesnegvyfvpafvglgapywdqfargiiigitrgtgre
hlaratleaiayltrdvvdemeklvqikelrvdggatandflmqfqadilnrkvirpvvk
ettalgaaylaglavdywadtreiaelwkaerifepkmdektrerlykgwkeavkramgw
akvvd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6k76B (B:)
mekfvlsldegttsaraiifdresnihgigqyefpqhyprpgwvehnpeeiwdaqlraik
daiqsariepnqiaaigvtnqrettlvwdkdgkplynaivwqcrrtaemveeikreygtm
ikektglvpdayfsasklkwlldnvpglrekaekgevmfgtvdtfliyrltgehvtdysn
asrtmlfnikkldwddellelfdipesvlpevressevygytkkellgaeipvsgdagdq
qaalfgqaafeagmvkatygtgsfilvntdkmvlysdnllttiawglngrvsyalegsif
vtgaavqwlrdgikiikhaseteelatklesnegvyfvpafvglgapywdqfargiiigi
trgtgrehlaratleaiayltrdvvdemeklvqikelrvdggatandflmqfqadilnrk
virpvvkettalgaaylaglavdywadtreiaelwkaerifepkmdektrerlykgwkea
vkramgwakvvdsaksn

    Sequence, based on observed residues (ATOM records): (download) 
    >6k76B (B:)
mekfvlsldegttsaraiifdresnihgigqyefpvehnpeeiwdaqlraikdaiqsari
epnqiaaigvtnqrettlvwdkdgkplynaivwqcrrtaemveeikreygtmikektglv
pdayfsasklkwlldnvpglrekaekgevmfgtvdtfliyrltgehvtdysnasrtmlfn
ikkldwddellelfdipesvlpevressevygytkkellgaeipvsgdagdqqaalfgqa
afeagmvkatygtgsfilvntdkmvlysdnllttiawglngrvsyalegsifvtgaavqw
lrdgikiikhaseteelatklesnegvyfvpafvglgapywdqfargiiigitrgtgreh
laratleaiayltrdvvdemeklvqikelrvdggatandflmqfqadilnrkvirpvvke
ttalgaaylaglavdywadtreiaelwkaerifepkmdektrerlykgwkeavkramgwa
kv