PDB entry 6k4s

View 6k4s on RCSB PDB site
Description: crystal structure of xcas9 in complex with sgrna and dna (tgc pam)
Deposited on 2019-05-26, released 2019-09-25
The last revision was dated 2019-11-13, with a file datestamp of 2019-11-08.
Experiment type: XRAY
Resolution: 3.01 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: sgrna
    Species: STREPTOCOCCUS PYOGENES, synthetic [TaxId:1314]
  • Chain 'B':
    Compound: crispr-associated endonuclease cas9/csn1
    Species: Streptococcus pyogenes serotype M1 [TaxId:301447]
    Gene: cas9
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99ZW2
      • engineered mutation (9)
      • engineered mutation (79)
      • engineered mutation (261)
      • engineered mutation (323)
      • engineered mutation (408)
      • engineered mutation (479)
      • engineered mutation (542)
      • engineered mutation (573)
      • engineered mutation (693)
      • engineered mutation (839)
      • engineered mutation (1218)
  • Chain 'C':
    Compound: targeted DNA
    Species: STREPTOCOCCUS PYOGENES, synthetic [TaxId:1314]
  • Chain 'D':
    Compound: non-targeted DNA
    Species: STREPTOCOCCUS PYOGENES, synthetic [TaxId:1314]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6k4sB (B:)
    mdkkysiglaigtnsvgwavitdeykvpskkfkvlgntdrhsikknligallfdsgetae
    atrlkrtarrrytrrknrilylqeifsnemakvddsffhrleesflveedkkherhpifg
    nivdevayhekyptiyhlrkklvdstdkadlrliylalahmikfrghfliegdlnpdnsd
    vdklfiqlvqtynqlfeenpinasgvdakailsarlsksrrlenliaqlpgekknglfgn
    lialslgltpnfksnfdlaedtklqlskdtydddldnllaqigdqyadlflaaknlsdai
    llsdilrvnteitkaplsasmiklydehhqdltllkalvrqqlpekykeiffdqskngya
    gyidggasqeefykfikpilekmdgteellvklnredllrkqrtfdngiiphqihlgelh
    ailrrqedfypflkdnrekiekiltfripyyvgplargnsrfawmtrkseetitpwnfek
    vvdkgasaqsfiermtnfdknlpnekvlpkhsllyeyftvyneltkvkyvtegmrkpafl
    sgdqkkaivdllfktnrkvtvkqlkedyfkkieefdsveisgvedrfnaslgtyhdllki
    ikdkdfldneenediledivltltlfedremieerlktyahlfddkvmkqlkrrrytgwg
    rlsrklingirdkqsgktildflksdgfanrnfiqlihddsltfkediqkaqvsgqgdsl
    hehianlagspaikkgilqtvkvvdelvkvmgrhkpeniviemarenqttqkgqknsrer
    mkrieegikelgsqilkehpventqlqneklylyylqngrdmyvdqeldinrlsdydvda
    ivpqsflkddsidnkvltrsdknrgksdnvpseevvkkmknywrqllnaklitqrkfdnl
    tkaergglseldkagfikrqlvetrqitkhvaqildsrmntkydendklirevkvitlks
    klvsdfrkdfqfykvreinnyhhahdaylnavvgtalikkypklesefvygdykvydvrk
    miakseqeigkatakyffysnimnffkteitlangeirkrplietngetgeivwdkgrdf
    atvrkvlsmpqvnivkktevqtggfskesilpkrnsdkliarkkdwdpkkyggfdsptva
    ysvlvvakvekgkskklksvkellgitimerssfeknpidfleakgykevkkdliiklpk
    yslfelengrkrmlasagvlqkgnelalpskyvnflylashyeklkgspedneqkqlfve
    qhkhyldeiieqisefskrviladanldkvlsaynkhrdkpireqaeniihlftltnlga
    paafkyfdttidrkrytstkevldatlihqsitglyetridlsqlggd
    

    Sequence, based on observed residues (ATOM records):
    >6k4sB (B:)
    kkysiglaigtnsvgwavitdeykvpskkfkvlgntdrhsikknligallfdsgetaeat
    rlkrtarrrytrrknrilylqeifsnemakvddsffhrleesflveedkkherhpifgni
    vdevayhekyptiyhlrkklvdstdkadlrliylalahmikfrghfliegdlnpdnvdkl
    fiqlvqtynqlfeenpinasgvdakailsarlsksrrlenliaqlpgekknglfgnlial
    slgltpnfksnfdlaedtklqlskdtydddldnllaqigdqyadlflaaknlsdaillsd
    ilrvnteitkaplsasmiklydehhqdltllkalvrqqlpekykeiffdqskngyagyid
    ggasqeefykfikpilekmdgteellvklnredllrkqrtfdngiiphqihlgelhailr
    rqedfypflkdnrekiekiltfripyyvgplargnsrfawmtrkseetitpwnfekvvdk
    gasaqsfiermtnfdknlpnekvlpkhsllyeyftvyneltkvkyvtegmrkpaflsgdq
    kkaivdllfktnrkvtvkqlkedyfkkieefdsveisgvedrfnaslgtyhdllkiikdk
    dfldneenediledivltltlfedremieerlktyahlfddkvmkqlkrrrytgwgrlsr
    klingirdkqsgktildflksdgfanrnfiqlihddsltfkediqkaqslhehianlags
    paikkgilqtvkvvdelvkvmgrhkpeniviemarsrermkrieegikelgsqilkehpv
    entqlqneklylyylgrdmyvdqeldinrlsdydvdaivpqsflkddsidnkvltrsdkn
    rgksdnvpseevvkkmknywrqllnaklitqrkfdnltkaergglseldkagfikrqlve
    trqitkhvaqildsrmntkydendklirevkvitlksklvsdfrkdfqfykvreinnyhh
    ahdaylnavvgtalikkypklesefvygdgkatakyffysnimnffkteitkrplietng
    etgeivwdkgrdfatvrkvlsmpqvnivkktevqtggfskesilpkrnsdkliarkkdwd
    pkkyggfdsptvaysvlvvakvekgkskklksvkellgitimerssfeknpidfleakgy
    kevkkdliiklpkyslfelengrkrmlasagvlqkgnelalpskyvnflylashneqkql
    fveqhkhyldeiieqisefskrviladanldkvlsaynkhrdkpireqaeniihlftltn
    lgapaafkyfdttidrkrytstkevldatlihqsitglyetridlsql
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.