PDB entry 6k2d

View 6k2d on RCSB PDB site
Description: the crystal structure of gbp1 with lrr domain of ipah9.8
Deposited on 2019-05-14, released 2019-06-12
The last revision was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Guanylate-binding protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: GBP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: E3 ubiquitin-protein ligase ipaH9.8
    Species: Shigella flexneri [TaxId:623]
    Gene: ipaH9.8, CP0226, pWR501_0234, SFLP090
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6k2dA (A:)
semaseihmtgpmclientngrlmanpealkilsaitqpmvvvaivglyrtgksylmnkl
agkkkgfslgstvqshtkgiwmwcvphpkkpghilvlldteglgdvekgdnqndswifal
avllsstfvynsigtinqqamdqlyyvtelthrirsksspdenenevedsadfvsffpdf
vwtlrdfsldleadgqpltpdeyltyslklkkgtsqkdetfnlprlcirkffpkkkcfvf
drpvhrrklaqleklqdeeldpefvqqvadfcsyifsnsktktlsggiqvngprleslvl
tyvnaissgdlpcmenavlalaqiensaavqkaiahyeqqmgqkvqlptetlqelldlhr
dsereaievfirssfkdvdhlfqkelaaqlekkrddfckqnqeassdrcsallqvifspl
eeevkagiyskpggyrlfvqklqdlkkkyyeeprkgiqaeeilqtylkskesmtdailqt
d

    Sequence, based on observed residues (ATOM records):
    >6k2dA (A:)
ihmtgpmclientngrlmanpealkilsaitqpmvvvaivglyrtgksylmnklagkksh
tkgiwmwcvphpkkpghilvlldteglgdvekgdnqndswifalavllsstfvynsigti
nqqamdqlyyvtelthrirsksdsadfvsffpdfvwtlrdfpdeyltyslklkkgtsqkd
etfnlprlcirkffpkkkcfvfdrpvhdpefvqqvadfcsyifsnsktktlsggiqvngp
rleslvltyvnaissgdlpcmenavlalaqiensaavqkaiahyeqqmgqkvqlptetlq
elldlhrdsereaievfirssfkdvdhlfqkelaaqlekkrddfckqnqeassdrcsall
qvifspleeevkagiyskpggyrlfvqklqdlkkkyyeeprkgiqaeeilqtylkskesm
tdailqtd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6k2dB (B:)
sgrpmtyadyfsawdkwekqalpgeerdeavsrlkeclinnsdelrldrlnlsslpdnlp
aqitllnvsynqltnlpelpvtlkklysasnklselpvlppaleslqvqhnelenlpalp
dslltmnisyneivslpslpqalknlratrnfltelpafsegnnpvvreyffdrnqishi
pesilnlrnecsihisdnplsshalpalqrltsspdyhgpriyfsmsdgqqntlhr

    Sequence, based on observed residues (ATOM records):
    >6k2dB (B:)
tyadyfsawdkwekqalpgeerdeavsrlkeclinnsdelrldrlnlsslpdnlpaqitl
lnvsynqltnlpelpvtlkklysasnklselpvlppaleslqvqhnelenlpalpdsllt
mnisyneivslpslpqalknlratrnfltelpafsevreyffdrnqishipesilnlrne
csihisdnplsshalpalqrltsspdyhgpriyf