PDB entry 6k0v

View 6k0v on RCSB PDB site
Description: catalytic domain of gh87 alpha-1,3-glucanase d1069a in complex with tetrasaccharides
Deposited on 2019-05-07, released 2019-12-25
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha-1,3-glucanase
    Species: Paenibacillus glycanilyticus [TaxId:126569]
    Gene: agl
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A068PS59 (Start-572)
      • engineered mutation (354)
  • Chain 'B':
    Compound: Alpha-1,3-glucanase
    Species: Paenibacillus glycanilyticus [TaxId:126569]
    Gene: agl
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A068PS59 (Start-572)
      • engineered mutation (354)
  • Chain 'C':
    Compound: Alpha-1,3-glucanase
    Species: Paenibacillus glycanilyticus [TaxId:126569]
    Gene: agl
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A068PS59 (Start-572)
      • engineered mutation (354)
  • Chain 'D':
    Compound: Alpha-1,3-glucanase
    Species: Paenibacillus glycanilyticus [TaxId:126569]
    Gene: agl
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A068PS59 (Start-572)
      • engineered mutation (354)
  • Heterogens: SO4, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6k0vA (A:)
agsvdtvslysgrganmpftimeaestsnatngtkltpnfkpgdyageasgrssvyldat
geyveftltspanafvlrnavaenttgtvsiyadgvskgkfnvsskfsylyatpstlgrl
gydnapgagltaywlyedaqlmldqvypagtkikiqkdagdvswiyvdlletenvappqa
npdptkyvavsasksidqaltefrqdntkkgiyipagewtinskiflygrateivgagpw
ytklvapqsqsntdvgfnisaaangstirdlsawgnyinrvdgpgkfidgngmqnvtvqn
iwvehfvclywgvnssyntfknnrikntfadginmtngssynvidnnyargtgdasfalf
satdsggsynvgnkytnltatnvrraaafavyggsdnlfqnlygadtltypgitissysf
gyntlgfgdqdtvidgatldrtggdfwtsvgaddkineyqnfgaiwiyggdraiknilik
nvdinnpvyfglmfqsmspnnmvmqnirvenvninnpsrygiklvvraeqgqgpayggas
ftnvkvnnpgisaiygeaqspnftvtrvsgnnw

    Sequence, based on observed residues (ATOM records):
    >6k0vA (A:)
grganmpftimeaestsnatngtkltpnfkpgdyageasgrssvyldatgeyveftltsp
anafvlrnavaenttgtvsiyadgvskgkfnvsskfsylyatpstlgrlgydnapgaglt
aywlyedaqlmldqvypagtkikiqkdagdvswiyvdlletenvappqanpdptkyvavs
asksidqaltefrqdntkkgiyipagewtinskiflygrateivgagpwytklvapqsqs
ntdvgfnisaaangstirdlsawgnyinrvdgpgkfidgngmqnvtvqniwvehfvclyw
gvnssyntfknnrikntfadginmtngssynvidnnyargtgdasfalfsatdsggsynv
gnkytnltatnvrraaafavyggsdnlfqnlygadtltypgitissysfgyntlgfgdqd
tvidgatldrtggdfwtsvgaddkineyqnfgaiwiyggdraikniliknvdinnpvyfg
lmfqsmspnnmvmqnirvenvninnpsrygiklvvraeqgqgpayggasftnvkvnnpgi
saiygeaqspnftvtrvsgnnw

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6k0vB (B:)
agsvdtvslysgrganmpftimeaestsnatngtkltpnfkpgdyageasgrssvyldat
geyveftltspanafvlrnavaenttgtvsiyadgvskgkfnvsskfsylyatpstlgrl
gydnapgagltaywlyedaqlmldqvypagtkikiqkdagdvswiyvdlletenvappqa
npdptkyvavsasksidqaltefrqdntkkgiyipagewtinskiflygrateivgagpw
ytklvapqsqsntdvgfnisaaangstirdlsawgnyinrvdgpgkfidgngmqnvtvqn
iwvehfvclywgvnssyntfknnrikntfadginmtngssynvidnnyargtgdasfalf
satdsggsynvgnkytnltatnvrraaafavyggsdnlfqnlygadtltypgitissysf
gyntlgfgdqdtvidgatldrtggdfwtsvgaddkineyqnfgaiwiyggdraiknilik
nvdinnpvyfglmfqsmspnnmvmqnirvenvninnpsrygiklvvraeqgqgpayggas
ftnvkvnnpgisaiygeaqspnftvtrvsgnnw

    Sequence, based on observed residues (ATOM records):
    >6k0vB (B:)
grganmpftimeaestsnatngtkltpnfkpgdyageasgrssvyldatgeyveftltsp
anafvlrnavaenttgtvsiyadgvskgkfnvsskfsylyatpstlgrlgydnapgaglt
aywlyedaqlmldqvypagtkikiqkdagdvswiyvdlletenvappqanpdptkyvavs
asksidqaltefrqdntkkgiyipagewtinskiflygrateivgagpwytklvapqsqs
ntdvgfnisaaangstirdlsawgnyinrvdgpgkfidgngmqnvtvqniwvehfvclyw
gvnssyntfknnrikntfadginmtngssynvidnnyargtgdasfalfsatdsggsynv
gnkytnltatnvrraaafavyggsdnlfqnlygadtltypgitissysfgyntlgfgdqd
tvidgatldrtggdfwtsvgaddkineyqnfgaiwiyggdraikniliknvdinnpvyfg
lmfqsmspnnmvmqnirvenvninnpsrygiklvvraeqgqgpayggasftnvkvnnpgi
saiygeaqspnftvtrvsgnnw

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6k0vC (C:)
agsvdtvslysgrganmpftimeaestsnatngtkltpnfkpgdyageasgrssvyldat
geyveftltspanafvlrnavaenttgtvsiyadgvskgkfnvsskfsylyatpstlgrl
gydnapgagltaywlyedaqlmldqvypagtkikiqkdagdvswiyvdlletenvappqa
npdptkyvavsasksidqaltefrqdntkkgiyipagewtinskiflygrateivgagpw
ytklvapqsqsntdvgfnisaaangstirdlsawgnyinrvdgpgkfidgngmqnvtvqn
iwvehfvclywgvnssyntfknnrikntfadginmtngssynvidnnyargtgdasfalf
satdsggsynvgnkytnltatnvrraaafavyggsdnlfqnlygadtltypgitissysf
gyntlgfgdqdtvidgatldrtggdfwtsvgaddkineyqnfgaiwiyggdraiknilik
nvdinnpvyfglmfqsmspnnmvmqnirvenvninnpsrygiklvvraeqgqgpayggas
ftnvkvnnpgisaiygeaqspnftvtrvsgnnw

    Sequence, based on observed residues (ATOM records):
    >6k0vC (C:)
grganmpftimeaestsnatngtkltpnfkpgdyageasgrssvyldatgeyveftltsp
anafvlrnavaenttgtvsiyadgvskgkfnvsskfsylyatpstlgrlgydnapgaglt
aywlyedaqlmldqvypagtkikiqkdagdvswiyvdlletenvappqanpdptkyvavs
asksidqaltefrqdntkkgiyipagewtinskiflygrateivgagpwytklvapqsqs
ntdvgfnisaaangstirdlsawgnyinrvdgpgkfidgngmqnvtvqniwvehfvclyw
gvnssyntfknnrikntfadginmtngssynvidnnyargtgdasfalfsatdsggsynv
gnkytnltatnvrraaafavyggsdnlfqnlygadtltypgitissysfgyntlgfgdqd
tvidgatldrtggdfwtsvgaddkineyqnfgaiwiyggdraikniliknvdinnpvyfg
lmfqsmspnnmvmqnirvenvninnpsrygiklvvraeqgqgpayggasftnvkvnnpgi
saiygeaqspnftvtrvsgnnw

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6k0vD (D:)
agsvdtvslysgrganmpftimeaestsnatngtkltpnfkpgdyageasgrssvyldat
geyveftltspanafvlrnavaenttgtvsiyadgvskgkfnvsskfsylyatpstlgrl
gydnapgagltaywlyedaqlmldqvypagtkikiqkdagdvswiyvdlletenvappqa
npdptkyvavsasksidqaltefrqdntkkgiyipagewtinskiflygrateivgagpw
ytklvapqsqsntdvgfnisaaangstirdlsawgnyinrvdgpgkfidgngmqnvtvqn
iwvehfvclywgvnssyntfknnrikntfadginmtngssynvidnnyargtgdasfalf
satdsggsynvgnkytnltatnvrraaafavyggsdnlfqnlygadtltypgitissysf
gyntlgfgdqdtvidgatldrtggdfwtsvgaddkineyqnfgaiwiyggdraiknilik
nvdinnpvyfglmfqsmspnnmvmqnirvenvninnpsrygiklvvraeqgqgpayggas
ftnvkvnnpgisaiygeaqspnftvtrvsgnnw

    Sequence, based on observed residues (ATOM records):
    >6k0vD (D:)
grganmpftimeaestsnatngtkltpnfkpgdyageasgrssvyldatgeyveftltsp
anafvlrnavaenttgtvsiyadgvskgkfnvsskfsylyatpstlgrlgydnapgaglt
aywlyedaqlmldqvypagtkikiqkdagdvswiyvdlletenvappqanpdptkyvavs
asksidqaltefrqdntkkgiyipagewtinskiflygrateivgagpwytklvapqsqs
ntdvgfnisaaangstirdlsawgnyinrvdgpgkfidgngmqnvtvqniwvehfvclyw
gvnssyntfknnrikntfadginmtngssynvidnnyargtgdasfalfsatdsggsynv
gnkytnltatnvrraaafavyggsdnlfqnlygadtltypgitissysfgyntlgfgdqd
tvidgatldrtggdfwtsvgaddkineyqnfgaiwiyggdraikniliknvdinnpvyfg
lmfqsmspnnmvmqnirvenvninnpsrygiklvvraeqgqgpayggasftnvkvnnpgi
saiygeaqspnftvtrvsgnnw