PDB entry 6jyz

View 6jyz on RCSB PDB site
Description: crystal structure of endogalactoceramidase
Deposited on 2019-04-29, released 2019-10-02
The last revision was dated 2020-03-25, with a file datestamp of 2020-03-20.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: N/A
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative secreted endoglycosylceramidase
    Species: Rhodococcus hoagii (strain 103S) [TaxId:685727]
    Gene: REQ_10740
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PE4, IPA, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jyzA (A:)
    mgsshhhhhhssglvprgshmlprltvedgaikdvdgrtvllrganvnglndyasngagl
    ptvapldrtdfeamaalgfdvvrlniawsaleptpgafdaayvarireavqdakdngiyt
    vldmhqdawgpyvgtpegqdcppllqrgigwdgapewatltggwttcniggqreaspava
    rafqafyddeqgvqghlvqtwarlaaefrnepavvgydllnepnpglrdpfaaadqigrf
    yqraiaairqaetggfphlvifepsalwsafgfdalpprhyladplvvfsphlysqsinv
    ssefpsiedgfriavaaadwygaplwtgewgwfgdpdeqagqvrrfvdamnthriggaww
    swtqacgdphavkdgntaepqgnlnridcpsgeeqglvegfaeqlaraypraapglteva
    tegfrgdgsgrieawypgaerpqldtvnvadvaltrvdggwrligeaageysvttl
    

    Sequence, based on observed residues (ATOM records):
    >6jyzA (A:)
    lprltvedgaikdvdgrtvllrganvnglndyasngaglptvapldrtdfeamaalgfdv
    vrlniawsaleptpgafdaayvarireavqdakdngiytvldmhqdawgpyvgtpegqdc
    ppllqrgigwdgapewatltggwttcniggqreaspavarafqafyddeqgvqghlvqtw
    arlaaefrnepavvgydllnepnpglrdpfaaadqigrfyqraiaairqaetggfphlvi
    fepsalwsafgfdalpprhyladplvvfsphlysqsinvssefpsiedgfriavaaadwy
    gaplwtgewgwfgdpdeqagqvrrfvdamnthriggawwswtqacgdphavkdgntaepq
    gnlnridcpsgeeqglvegfaeqlaraypraapgltevategfrgdgsgrieawypgaer
    pqldtvnvadvaltrvdggwrligeaageysvttl