PDB entry 6jyr

View 6jyr on RCSB PDB site
Description: GII.13/21 noroviruses recognize glycans with a terminal beta-galactose via an unconventional glycan binding site
Class: viral protein
Keywords: human noroviruses, histo-blood group antigens, glycan, receptor, VIRAL PROTEIN
Deposited on 2019-04-27, released 2019-05-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: norovirus P domain protein
    Species: Human norovirus - Alphatron [TaxId:106516]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JYR (0-307)
    Domains in SCOPe 2.08: d6jyra_
  • Chain 'B':
    Compound: norovirus P domain protein
    Species: Human norovirus - Alphatron [TaxId:106516]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JYR (0-307)
    Domains in SCOPe 2.08: d6jyrb_
  • Chain 'C':
    Compound: norovirus P domain protein
    Species: Human norovirus - Alphatron [TaxId:106516]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JYR (0-307)
    Domains in SCOPe 2.08: d6jyrc_
  • Chain 'D':
    Compound: norovirus P domain protein
    Species: Human norovirus - Alphatron [TaxId:106516]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JYR (0-307)
    Domains in SCOPe 2.08: d6jyrd_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6jyrA (A:)
tksftlpiltisemtnsrfpipieqlytapnetnvvqcqngrctldgelqgttqllssai
csyrgrtlanndswdqnllqlsypngasydptdevpaplgtqdfsgilygvltqdnvteg
tgeaknakgiyisttsgkftpkigsiglhsitgdvhhnqqsrftpvgiavnentpfkqwv
lphysgslalntnlapavaptfpgeqllffrsrvpcvqglhgqdafidcllpqewvnhfy
qeaapsqtdvalirfvnpdtgrtlfeaklhrsgfitvshtgnyplvippnghfrfdswvn
qfyslapm

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6jyrB (B:)
tksftlpiltisemtnsrfpipieqlytapnetnvvqcqngrctldgelqgttqllssai
csyrgrtlanndswdqnllqlsypngasydptdevpaplgtqdfsgilygvltqdnvteg
tgeaknakgiyisttsgkftpkigsiglhsitgdvhhnqqsrftpvgiavnentpfkqwv
lphysgslalntnlapavaptfpgeqllffrsrvpcvqglhgqdafidcllpqewvnhfy
qeaapsqtdvalirfvnpdtgrtlfeaklhrsgfitvshtgnyplvippnghfrfdswvn
qfyslapm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6jyrC (C:)
tksftlpiltisemtnsrfpipieqlytapnetnvvqcqngrctldgelqgttqllssai
csyrgrtlanndswdqnllqlsypngasydptdevpaplgtqdfsgilygvltqdnvteg
tgeaknakgiyisttsgkftpkigsiglhsitgdvhhnqqsrftpvgiavnentpfkqwv
lphysgslalntnlapavaptfpgeqllffrsrvpcvqglhgqdafidcllpqewvnhfy
qeaapsqtdvalirfvnpdtgrtlfeaklhrsgfitvshtgnyplvippnghfrfdswvn
qfyslapm

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6jyrD (D:)
tksftlpiltisemtnsrfpipieqlytapnetnvvqcqngrctldgelqgttqllssai
csyrgrtlanndswdqnllqlsypngasydptdevpaplgtqdfsgilygvltqdnvteg
tgeaknakgiyisttsgkftpkigsiglhsitgdvhhnqqsrftpvgiavnentpfkqwv
lphysgslalntnlapavaptfpgeqllffrsrvpcvqglhgqdafidcllpqewvnhfy
qeaapsqtdvalirfvnpdtgrtlfeaklhrsgfitvshtgnyplvippnghfrfdswvn
qfyslapm