PDB entry 6jyo

View 6jyo on RCSB PDB site
Description: GII.13/21 noroviruses recognize glycans with a terminal beta-galactose via an unconventional glycan binding site
Class: viral protein
Keywords: human noroviruses, histo-blood group antigens, glycan, receptor, VIRAL PROTEIN
Deposited on 2019-04-27, released 2019-05-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: norovirus P domain protein
    Species: Human norovirus - Alphatron [TaxId:106516]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JYO (0-308)
    Domains in SCOPe 2.08: d6jyoa_
  • Chain 'B':
    Compound: norovirus P domain protein
    Species: Human norovirus - Alphatron [TaxId:106516]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JYO (0-308)
    Domains in SCOPe 2.08: d6jyob_
  • Chain 'C':
    Compound: norovirus P domain protein
    Species: Human norovirus - Alphatron [TaxId:106516]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JYO (0-308)
    Domains in SCOPe 2.08: d6jyoc_
  • Chain 'D':
    Compound: norovirus P domain protein
    Species: Human norovirus - Alphatron [TaxId:106516]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JYO (0-308)
    Domains in SCOPe 2.08: d6jyod_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6jyoA (A:)
tkpftlpiltiseltnsrfpipieqlytapnennvvqcqngrctldgelqgttqllssav
csyrgrtvansgdywdqnllqltypsgasydptdevpaplgtqdfsgilygvltqdnvse
gtgeaknakgvyisttsgkftpkigsiglhsitenvhpnqqsrftpvgvaqnentpfqqw
vlphyagalalntnlapavaptfpgeqllffrsrvpcvqglrgqdafidcllpqewvnhf
yqeaapsqadvaliryvnpdtgrtlfeaklhrsgfitvshtgayplvvppnghfrfdswv
nqfyslapm

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6jyoB (B:)
tkpftlpiltiseltnsrfpipieqlytapnennvvqcqngrctldgelqgttqllssav
csyrgrtvansgdywdqnllqltypsgasydptdevpaplgtqdfsgilygvltqdnvse
gtgeaknakgvyisttsgkftpkigsiglhsitenvhpnqqsrftpvgvaqnentpfqqw
vlphyagalalntnlapavaptfpgeqllffrsrvpcvqglrgqdafidcllpqewvnhf
yqeaapsqadvaliryvnpdtgrtlfeaklhrsgfitvshtgayplvvppnghfrfdswv
nqfyslapm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6jyoC (C:)
tkpftlpiltiseltnsrfpipieqlytapnennvvqcqngrctldgelqgttqllssav
csyrgrtvansgdywdqnllqltypsgasydptdevpaplgtqdfsgilygvltqdnvse
gtgeaknakgvyisttsgkftpkigsiglhsitenvhpnqqsrftpvgvaqnentpfqqw
vlphyagalalntnlapavaptfpgeqllffrsrvpcvqglrgqdafidcllpqewvnhf
yqeaapsqadvaliryvnpdtgrtlfeaklhrsgfitvshtgayplvvppnghfrfdswv
nqfyslapm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6jyoD (D:)
tkpftlpiltiseltnsrfpipieqlytapnennvvqcqngrctldgelqgttqllssav
csyrgrtvansgdywdqnllqltypsgasydptdevpaplgtqdfsgilygvltqdnvse
gtgeaknakgvyisttsgkftpkigsiglhsitenvhpnqqsrftpvgvaqnentpfqqw
vlphyagalalntnlapavaptfpgeqllffrsrvpcvqglrgqdafidcllpqewvnhf
yqeaapsqadvaliryvnpdtgrtlfeaklhrsgfitvshtgayplvvppnghfrfdswv
nqfyslapm

    Sequence, based on observed residues (ATOM records): (download) 
    >6jyoD (D:)
tkpftlpiltiseltnsrfpipieqlytapnennvvqcqngrctldgelqgttqllssav
csyrgrtvansgdywdqnllqltypsgasydptdevpaplgtqdfsgilygvltqdnvse
gtgeaknakgvyisttsgkftpkigsiglhsitenvhpnqqsrftpvgvaqnentpfqqw
vlphyagalalntnlapavaptfpgeqllffrsrvpcvqglrgqdafidcllpqewvnhf
yqeaapsqadvaliryvnpgrtlfeaklhrsgfitvshtgayplvvppnghfrfdswvnq
fyslapm