PDB entry 6jw3

View 6jw3 on RCSB PDB site
Description: degenerate rvd rg forms a distinct loop conformation
Deposited on 2019-04-18, released 2020-04-22
The last revision was dated 2020-11-04, with a file datestamp of 2020-10-30.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: TAL effector
    Species: Xanthomonas campestris pv. armoraciae [TaxId:329463]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JW3 (0-End)
  • Chain 'B':
    Compound: TAL effector
    Species: Xanthomonas campestris pv. armoraciae [TaxId:329463]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JW3 (0-End)
  • Chain 'C':
    Compound: DNA (5'-d(*tp*gp*tp*cp*cp*cp*tp*tp*(5cm)p*gp*cp*gp*tp*cp*tp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA (5'-d(*ap*gp*ap*gp*ap*cp*gp*cp*gp*ap*ap*gp*gp*gp*ap*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'E':
    Compound: TAL effector
    Species: Xanthomonas campestris pv. armoraciae [TaxId:329463]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JW3 (0-End)
  • Chain 'F':
    Compound: DNA (5'-d(*tp*gp*tp*cp*cp*cp*tp*tp*(5cm)p*gp*cp*gp*tp*cp*tp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: DNA (5'-d(*ap*gp*ap*gp*ap*cp*gp*cp*gp*ap*ap*gp*gp*gp*ap*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: TAL effector
    Species: Xanthomonas campestris pv. armoraciae [TaxId:329463]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JW3 (0-End)
  • Chain 'I':
    Compound: DNA (5'-d(*tp*gp*tp*cp*cp*cp*tp*tp*(5cm)p*gp*cp*gp*tp*cp*tp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'J':
    Compound: DNA (5'-d(*ap*gp*ap*gp*ap*cp*gp*cp*gp*ap*ap*gp*gp*gp*ap*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'K':
    Compound: DNA (5'-d(*tp*gp*tp*cp*cp*cp*tp*tp*(5cm)p*gp*cp*gp*tp*cp*tp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'L':
    Compound: DNA (5'-d(*ap*gp*ap*gp*ap*cp*gp*cp*gp*ap*ap*gp*gp*gp*ap*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: 5CM, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jw3A (A:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
rgggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jw3A (A:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
rgggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhh

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jw3B (B:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
rgggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jw3B (B:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
rgggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhh

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6jw3E (E:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
rgggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jw3E (E:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
rgggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhh

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6jw3H (H:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
rgggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jw3H (H:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
rgggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhh

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.