PDB entry 6jvz

View 6jvz on RCSB PDB site
Description: rvd ha specifically contacts 5mc through van der waals interactions
Deposited on 2019-04-18, released 2020-04-22
The last revision was dated 2020-11-04, with a file datestamp of 2020-10-30.
Experiment type: XRAY
Resolution: 2.48 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: TAL effector
    Species: Xanthomonas campestris pv. armoraciae [TaxId:329463]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JVZ (0-End)
  • Chain 'B':
    Compound: TAL effector
    Species: Xanthomonas campestris pv. armoraciae [TaxId:329463]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JVZ (0-End)
  • Chain 'C':
    Compound: DNA (5'-d(*tp*gp*tp*cp*cp*cp*tp*tp*(5cm)p*gp*cp*gp*tp*cp*tp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA (5'-d(*ap*gp*ap*gp*ap*cp*gp*cp*gp*ap*ap*gp*gp*gp*ap*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'I':
    Compound: DNA (5'-d(*tp*gp*tp*cp*cp*cp*tp*tp*(5cm)p*gp*cp*gp*tp*cp*tp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'J':
    Compound: DNA (5'-d(*ap*gp*ap*gp*ap*cp*gp*cp*gp*ap*ap*gp*gp*gp*ap*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: 5CM, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jvzA (A:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
haggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jvzA (A:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
haggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhh

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jvzB (B:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
haggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jvzB (B:)
mqwsgaralealltvagelrgpplqldtgqllkiakrggvtaveavhawrnaltgaplnl
tpeqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiashdggkqaletvqrllp
vlcqahgltpeqvvaiashdggkqaletvqallpvlcqahgltpeqvvaiasngggkqal
etvqrllpvlcqahgltpqqvvaiasngggkqaletvqrllpvlcqahgltpqqvvaias
haggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvlcqahgltp
qqvvaiashdggkqaletvqrllpvlcqahgltpqqvvaiasnnggkqaletvqrllpvl
cqahgltpeqvvaiasngggkqaletvqrllpvlcqahgltpeqvvaiashdggkqalet
vqrllpvlcqahgltpqqvvaiasngggrpalesivaqlsrpdpalaaltndhlvalacl
ggrpaldavkklehhhh

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.