PDB entry 6jup

View 6jup on RCSB PDB site
Description: mutant poliv-dna incoming nucleotide complex
Deposited on 2019-04-15, released 2020-02-19
The last revision was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 2.44 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: DNA polymerase IV
  Species: Escherichia coli [TaxId:562]
  Gene: dinB, dbh, dinB_1, dinB_2, A8C65_11955, A9R57_12995, ACU57_05495, AML35_26730, AUQ13_19210, BANRA_02184, BANRA_03427, BET08_31995, BHS87_01175, BJJ90_21040, BMT91_15875, BUE81_28425, C5N07_13800, C9E25_22940, CA593_02435, CRM83_14635, CV83915_01335, CWS33_23695, D0X26_15110, D2185_22400, D3O91_23685, D3Y67_06560, D9D20_20085, D9D69_23735, D9E22_12045, D9F57_19765, D9H66_20200, D9H68_19465, D9I18_13635, D9J11_18290, D9J11_27145, D9J44_21795, DNQ41_05075, DTL43_23485, EAI44_14085, EAI52_15440, EC1094V2_3597, EC3234A_186c00130, EC3426_01008, EC382_20155, EC382_27145, ECTO6_03825, EEP23_17825, EFV02_01800, EFV04_12320, EFV12_23405, EFV17_17010, ERS085365_04420, ERS139211_04423, ERS150873_03537, HW43_04975, NCTC10865_04963, NCTC11022_04998, NCTC11126_03759, NCTC13148_06847, NCTC13462_02133, NCTC8985_02971, NCTC9037_04075, NCTC9045_04586, NCTC9058_02901, NCTC9062_04328, NCTC9073_03243, NCTC9117_04957, NCTC9706_01202, RK56_027425, SAMEA3472043_03017, SAMEA3472047_03125, SAMEA3472070_01946, SAMEA3484427_04943, SAMEA3484429_04916, SAMEA3752557_00095, SAMEA3752559_04620, SAMEA3753300_00345, SK85_00262, WQ89_22460, WR15_21380
  Database cross-references and differences (RAF-indexed):
  • Uniprot W8STT9 (2-341)
    • expression tag (0-1)
    • engineered mutation (13)
    • engineered mutation (43)
• Chain 'B':
  Compound: DNA (5'-d(p*gp*gp*gp*tp*cp*cp*tp*ap*gp*gp*ap*cp*cp*c)-3')
  Species: Escherichia coli, synthetic [TaxId:562]
  
• Chain 'C':
  Compound: DNA (5'-d(p*gp*gp*gp*tp*cp*cp*tp*ap*gp*gp*ap*cp*cp*c)-3')
  Species: Escherichia coli, synthetic [TaxId:562]
  
• Chain 'F':
  Compound: DNA polymerase IV
  Species: Escherichia coli [TaxId:562]
  Gene: dinB, dbh, dinB_1, dinB_2, A8C65_11955, A9R57_12995, ACU57_05495, AML35_26730, AUQ13_19210, BANRA_02184, BANRA_03427, BET08_31995, BHS87_01175, BJJ90_21040, BMT91_15875, BUE81_28425, C5N07_13800, C9E25_22940, CA593_02435, CRM83_14635, CV83915_01335, CWS33_23695, D0X26_15110, D2185_22400, D3O91_23685, D3Y67_06560, D9D20_20085, D9D69_23735, D9E22_12045, D9F57_19765, D9H66_20200, D9H68_19465, D9I18_13635, D9J11_18290, D9J11_27145, D9J44_21795, DNQ41_05075, DTL43_23485, EAI44_14085, EAI52_15440, EC1094V2_3597, EC3234A_186c00130, EC3426_01008, EC382_20155, EC382_27145, ECTO6_03825, EEP23_17825, EFV02_01800, EFV04_12320, EFV12_23405, EFV17_17010, ERS085365_04420, ERS139211_04423, ERS150873_03537, HW43_04975, NCTC10865_04963, NCTC11022_04998, NCTC11126_03759, NCTC13148_06847, NCTC13462_02133, NCTC8985_02971, NCTC9037_04075, NCTC9045_04586, NCTC9058_02901, NCTC9062_04328, NCTC9073_03243, NCTC9117_04957, NCTC9706_01202, RK56_027425, SAMEA3472043_03017, SAMEA3472047_03125, SAMEA3472070_01946, SAMEA3484427_04943, SAMEA3484429_04916, SAMEA3752557_00095, SAMEA3752559_04620, SAMEA3753300_00345, SK85_00262, WQ89_22460, WR15_21380
  Database cross-references and differences (RAF-indexed):
  • Uniprot W8STT9 (2-341)
    • expression tag (0-1)
    • engineered mutation (13)
    • engineered mutation (43)
• Chain 'G':
  Compound: DNA (5'-d(p*cp*tp*gp*gp*gp*gp*tp*cp*cp*tp*ap*gp*gp*ap*cp*cp*cp*c)-3')
  Species: Escherichia coli, synthetic [TaxId:562]
  
• Chain 'H':
  Compound: DNA (5'-d(p*gp*gp*gp*tp*cp*cp*tp*ap*gp*gp*ap*cp*cp*c)-3')
  Species: Escherichia coli, synthetic [TaxId:562]
  
• Heterogens: 0KX, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records:
  

  >6jupA (A:)
  gsrkiihvdmdcfaaavemrdnpalrdipiaiggsrerrgviscanyparkfgvrsampt
  gmalklcphltllpgrfdaykeasnhireifsrytsrieplsldeayldvtdsvhchgsa
  tliaqeirqtifnelqltasagvapvkflakiasdmnkpngqfvitpaevpaflqtlpla
  kipgvgkvsaakleamglrtcgdvqkcdlvmllkrfgkfgrilwersqgiderdvnserl
  rksvgvertmaedihhwseceaiierlypelerrlakvkpdlliarqgvklkfddfqqtt
  qehvwprlnkadliatarktwderrggrgvrlvglhvtlldp
  

  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'F':
  Sequence; same for both SEQRES and ATOM records:
  

  >6jupF (F:)
  gsrkiihvdmdcfaaavemrdnpalrdipiaiggsrerrgviscanyparkfgvrsampt
  gmalklcphltllpgrfdaykeasnhireifsrytsrieplsldeayldvtdsvhchgsa
  tliaqeirqtifnelqltasagvapvkflakiasdmnkpngqfvitpaevpaflqtlpla
  kipgvgkvsaakleamglrtcgdvqkcdlvmllkrfgkfgrilwersqgiderdvnserl
  rksvgvertmaedihhwseceaiierlypelerrlakvkpdlliarqgvklkfddfqqtt
  qehvwprlnkadliatarktwderrggrgvrlvglhvtlldp
  

  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.