PDB entry 6ju2

View 6ju2 on RCSB PDB site
Description: structure of influenza d virus polymerase bound to crna promoter in class 1
Deposited on 2019-04-12, released 2019-06-12
Made obsolete by 6kuj on 2019-10-02

The last revision was dated 2019-10-02, with a file datestamp of 2019-09-27.
Experiment type: EM
Resolution: 3.44 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polymerase 3
    Species: Influenza D virus [TaxId:1173138]
    Gene: P3
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RNA-directed RNA polymerase catalytic subunit
    Species: Influenza D virus [TaxId:1173138]
    Gene: Pb1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Polymerase PB2
    Species: Influenza D virus [TaxId:1173138]
    Gene: pb2
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: RNA (5'-r(p*up*cp*cp*up*up*gp*cp*up*ap*cp*up*gp*cp*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'V':
    Compound: RNA (5'-r(p*ap*gp*cp*ap*up*ap*ap*gp*cp*ap*gp*gp*ap*gp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ju2A (A:)
mssvireiakrfleqatiniaeevvreygdhertmisvgvhfqacclisdeytledettp
ryvlleglkrqeaiskqnnicstlgleplrnladifdrktrrflevgitkresdeyyqek
fnkigndmdihvftyegkyfsnnpnglediqktriftflsfvsdelrkenmftemyvtee
gapelemyksklfiamrdesvplpyinyehlrtrcetfkrnqaeceakvadvasrlkikl
ehleenklrpleipkekeapythkflmkdawffakphdseraqpqqilydffeaanmgfm
ttspkpifgkqglmyhslwgqtkraikdkrnelepseqrdflcgigraskkiqedkwqes
reeefkqeetkgaakrgfptwfneewlwamrdsgdgdnkigdwipmaemppcknemedya
kkmceeleskiqgtncaremsklihtigslhtecrnfpgkvkivpiycrgtlrgestdcl
fgiaikgkshlnkddgmytvvtfefsteepnpskhekytvfeagtvpveavvltpkrerv
lkekklflycrttgmsklkndwfskcrrcliptmetveqivlkecalkeenrvsemlenk
rawiahengenltrlvstklkdlcrmlivtqfyyciyndnqlegfcneqkkflmflqadk
dsksaftfnqkglyekieecivsnplcifladrlnklflvaksngakyfe

    Sequence, based on observed residues (ATOM records):
    >6ju2A (A:)
elemyksklfiamrdesvplpyinyehlrtrcetfkrnqaeceakvadvasrlkiklehl
eenklrpleipkekeapythkflmkdawffakphdseraqpqqilydffeaanmgfmtts
pkpifgkqglmyhslwgqtkraikdkrnelepseqrdflcgigraskkiqedkwqesree
efkqeetkgaakrgfptwfneewlwamrdskigdwipmaemppcknemedyakkmceele
skiqgtncaremsklihtigslhtecrnfpgkvkivpiycrgtlrgestdclfgiaikgk
shlnkddgmytvvtfefsteepnpskhekytvfeagtvpveakekklflycrttgmsklk
ndwfskcrrcliptmetveqivlkecalkeenrvsemlenkrawiahengenltrlvstk
lkdlcrmlivtqfyyciyndnqlegfcneqkkflmflqadkdsksaftfnqkglyekiee
civsnplcifladrlnklflvaksngakyfe

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ju2B (B:)
meinpyllmlnnditsmisltypytgappmshgtstkysmetvsrtysysrtkkevpsgi
fpierrkfcntiedkenlekpngnvdinfmlslaemleekmgkgffkfcaneaeaeilkm
hfskltegrqtydwtsernmpaatalqltvdaiqetqgtfkgttmveycnkilemmdwpe
vkfkkvrmivqrhwdpktkkeikmksptlmitkigreefikrictintmakdgergkykr
raiatpgmgirpfskivetlaqkicerlaesglpvggnekkaklkttvsstnsklqegqf
mvnitgdnskwnecqqpeaylamlayitkdssnlmkdlcsvaptlfcnkyvkmgqgfrak
nkrktkeivipakkmkerkelmnaewrdlfetiepymdgeccflgggmlmgmfnmlstvf
gvmtlnyreealarrncywtglqssddfvlfcisrtwpememtilkfiavcklmginmsl
eksygclpelfeftsmffsgdfvsnialelpafttagmnegtdftaamsvirtnminngl
spgtalmalriclqefratyrvhpydsgvknhrmkiirkfietienkdgllisdggklmn
nisslhipeeilkedlmdpsyrnrvfnprnpftqfektvdifkasgpirveeneavvsth
sfrtrsnrtllntdmramaleekryqvvcnmyrsvfesadvntpigsmsmgeaieakild
rartqfengiiggeeyseikrliedakrqrlsv

    Sequence, based on observed residues (ATOM records):
    >6ju2B (B:)
meinpyllmlnnditsmisltypytgappmshgtstkysmetvsrtysysrtkkevpsgi
fpierrkfcntiedkenlekpngnvdinfmlslaemleekmgkgffkfcaneaeaeilkm
hfskltegrqtydwtsernmpaatalqltvdaiqetqgtfkgttmveycnkilemmdwpe
vkfkkvtlmitkigreefikrictintmakdgergkykrraiatpgmgirpfskivetla
qkicerlaesglpvekkaklkttvsstnsklqegqfmvnitgdnskwnecqqpeaylaml
ayitkdssnlmkdlcsvaptlfcnkyvkmgqgfraknkrktkeivipakkmkerkelmna
ewrdlfetiepymdgeccflgggmlmgmfnmlstvfgvmtlnyreerncywtglqssddf
vlfcisrtwpememtilkfiavcklmginmsleksygclpelfeftsmffsgdfvsnial
elpafttagmnegtdftaamsvirtnminnglspgtalmalriclqefratyrvhpydsg
vknhrmkiirkfietienkdgllisdggklmnnisslhipeeilkedlmdpsyrnrvfnp
rnpfavvsthsfrtrsnrtllntdmramaleekryqvvcnmyrsvfesadvntpigsmsm
geaieakildrartqfengiiggeeyseikrliedakrqrlsv

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ju2C (C:)
msllltlakeyanltkdkksckllsqgtvssyttfkkwttsrkeknpslrmrwamgskfp
imanreileeagipeqwegidlwskkddvsklgmvlaspaaitywnfcgpgvdnssvikd
vykakfmkkerwretlwgpmnfelvgkqrrvvetqpveiklnqkeikeltmwvlfedean
laskfiqenfslvlslrelykgkavnkdvaafmiahqfspekrflptfgpirpermellh
clggdfwkieavtagslneeqkkrdvravarkiclrasvdlftpaekirdyiasvtmrfg
tvertfedvirnsddisaevtlckaalgcelgksmsfgnlnlrkvsgeaetmektvywgl
kpikykcwrgeetfycelrkvtcmfrrsegldwanigpgspeerrellamvmifcrdgrf
fesapvnidesffrtrlnkeipyqyvllkwvrqsrdnldallstrglipahigqfgkgmg
idgsssssmvykgvmlsktpidiveskekhrlflndnieavtergamvasimdlsednre
tfndvtfnhvdlavlkdektaiikiyrslverintdddglpalimgkrylelyqldevkd
avglipkrmlgaysyqarqliqsqikndsyslpeiikllpfcysppkkmlfdgtfhfknq
myvrpgintnlfsfsktdkskiyvngsavkiklvlgddemdtslafvegfqvceydprap
liprrdlrligfgkkvrvfvgqgqektlvrtsskraashdvsknirrmrlev

    Sequence, based on observed residues (ATOM records):
    >6ju2C (C:)
sllltlakeyanltkdkksckllsqgtvssyttfkkwttsrkeknpslrmrwamgskfpi
manreileeagipeqwegidlwskkdlgmvlaspaaitywnfcgpgvdnssvikdvykak
fmkkerwretlwgpmnfelvgkqrrvvetqpveiklnqkeikeltmwvlfedeanlaskf
iqenfslvlslrelykgkavnkdvaafmiahqfspekrflptfgpirpermellhclggd
fwkieavta

  • Chain 'R':
    No sequence available.

  • Chain 'V':
    No sequence available.