PDB entry 6ju0

View 6ju0 on RCSB PDB site
Description: Mouse antibody 3.3 Fab in complex with PEG
Class: immune system
Keywords: antibody Fab, influenza hemagglutinin, complex structure, specific binding, immune system
Deposited on 2019-04-12, released 2020-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-05, with a file datestamp of 2020-01-31.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JU0 (0-End)
    Domains in SCOPe 2.08: d6ju0h_
  • Chain 'I':
    Compound: Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JU0 (0-218)
    Domains in SCOPe 2.08: d6ju0i_
  • Chain 'J':
    Compound: Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JU0 (0-End)
    Domains in SCOPe 2.08: d6ju0j_
  • Chain 'K':
    Compound: Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JU0 (0-218)
    Domains in SCOPe 2.08: d6ju0k_
  • Chain 'L':
    Compound: Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JU0 (0-212)
    Domains in SCOPe 2.08: d6ju0l1, d6ju0l2
  • Chain 'M':
    Compound: Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JU0 (0-212)
    Domains in SCOPe 2.08: d6ju0m1, d6ju0m2
  • Chain 'N':
    Compound: Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JU0 (0-212)
    Domains in SCOPe 2.08: d6ju0n1, d6ju0n2
  • Chain 'O':
    Compound: Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JU0 (0-212)
    Domains in SCOPe 2.08: d6ju0o1, d6ju0o2
  • Heterogens: 1PE, TOE, PE3, PG4, HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6ju0H (H:)
evkleesggglvqpggsmklscaasgfifsdawmdwvrqsperglewvaeirskanglap
yyaesvkgrftisrddskssvylqmnnlrsedtgiyyctstlyyfdywgqgttltvssak
ttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdly
tlsssvtvpsstwpsetvtcnvahpasstkvdkkivprd

    Sequence, based on observed residues (ATOM records): (download) 
    >6ju0H (H:)
evkleesggglvqpggsmklscaasgfifsdawmdwvrqsperglewvaeirskanglap
yyaesvkgrftisrddskssvylqmnnlrsedtgiyyctstlyyfdywgqgttltvssak
ttppsvyplapnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssv
tvpsstwpsetvtcnvahpasstkvdkkivpr

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >6ju0I (I:)
evkleesggglvqpggsmklscaasgfifsdawmdwvrqsperglewvaeirskanglap
yyaesvkgrftisrddskssvylqmnnlrsedtgiyyctstlyyfdywgqgttltvssak
ttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdly
tlsssvtvpsstwpsetvtcnvahpasstkvdkkivprd

    Sequence, based on observed residues (ATOM records): (download) 
    >6ju0I (I:)
evkleesggglvqpggsmklscaasgfifsdawmdwvrqsperglewvaeirskanglap
yyaesvkgrftisrddskssvylqmnnlrsedtgiyyctstlyyfdywgqgttltvssak
ttppsvyplapnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssv
tvpsstwpsetvtcnvahpasstkvdkkivprd

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >6ju0J (J:)
evkleesggglvqpggsmklscaasgfifsdawmdwvrqsperglewvaeirskanglap
yyaesvkgrftisrddskssvylqmnnlrsedtgiyyctstlyyfdywgqgttltvssak
ttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdly
tlsssvtvpsstwpsetvtcnvahpasstkvdkkivprd

    Sequence, based on observed residues (ATOM records): (download) 
    >6ju0J (J:)
evkleesggglvqpggsmklscaasgfifsdawmdwvrqsperglewvaeirskanglap
yyaesvkgrftisrddskssvylqmnnlrsedtgiyyctstlyyfdywgqgttltvssak
ttppsvyplapnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssv
tvpsstwpsetvtcnvahpasstkvdkkivpr

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >6ju0K (K:)
evkleesggglvqpggsmklscaasgfifsdawmdwvrqsperglewvaeirskanglap
yyaesvkgrftisrddskssvylqmnnlrsedtgiyyctstlyyfdywgqgttltvssak
ttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdly
tlsssvtvpsstwpsetvtcnvahpasstkvdkkivprd

    Sequence, based on observed residues (ATOM records): (download) 
    >6ju0K (K:)
evkleesggglvqpggsmklscaasgfifsdawmdwvrqsperglewvaeirskanglap
yyaesvkgrftisrddskssvylqmnnlrsedtgiyyctstlyyfdywgqgttltvssak
ttppsvyplapnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssv
tvpsstwpsetvtcnvahpasstkvdkkivprd

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ju0L (L:)
eivltqspaimsafpgervtltcsasssvrssylcwyqqkpgsspklwiystsnlasgvp
arfsgsgsgtsysltissmeaedaasyfchqwssyprtfgggtkleikradaaptvsifp
psseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstl
tltkdeyerhnsytceathktstspivksfnrn

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ju0M (M:)
eivltqspaimsafpgervtltcsasssvrssylcwyqqkpgsspklwiystsnlasgvp
arfsgsgsgtsysltissmeaedaasyfchqwssyprtfgggtkleikradaaptvsifp
psseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstl
tltkdeyerhnsytceathktstspivksfnrn

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ju0N (N:)
eivltqspaimsafpgervtltcsasssvrssylcwyqqkpgsspklwiystsnlasgvp
arfsgsgsgtsysltissmeaedaasyfchqwssyprtfgggtkleikradaaptvsifp
psseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstl
tltkdeyerhnsytceathktstspivksfnrn

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ju0O (O:)
eivltqspaimsafpgervtltcsasssvrssylcwyqqkpgsspklwiystsnlasgvp
arfsgsgsgtsysltissmeaedaasyfchqwssyprtfgggtkleikradaaptvsifp
psseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstl
tltkdeyerhnsytceathktstspivksfnrn