PDB entry 6jto

View 6jto on RCSB PDB site
Description: crystal structure of hla-c05 in complex with a tumor mut10m peptide
Deposited on 2019-04-11, released 2020-04-15
The last revision was dated 2021-05-19, with a file datestamp of 2021-05-14.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, Cw-5 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-C, HLAC
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 10-mer Peptide
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JTO (0-9)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6jtoA (A:)
shsmryfytavsrpgrgeprfiavgyvddtqfvqfdsdaasprgeprapwveqegpeywd
retqkykrqaqtdrvnlrklrgyynqseagshtlqrmygcdlgpdgrllrgynqfaydgk
dyialnedlrswtaadkaaqitqrkweaareaeqrraylegtcvewlrrylengkktlqr
aehpkthvthhpvsdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgtf
qkwaavvvpsgeeqrytchvqheglpepltlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6jtoB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrd

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6jtoC (C:)
gadgvgksal