PDB entry 6jtk

View 6jtk on RCSB PDB site
Description: crystal structure of nagz from neisseria gonorrhoeae in complex with n-trifluoroacetyl-d-glucosamine
Deposited on 2019-04-11, released 2020-05-13
The last revision was dated 2020-05-13, with a file datestamp of 2020-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-hexosaminidase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: nagZ, NGO0135
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-hexosaminidase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: nagZ, NGO0135
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Beta-hexosaminidase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: nagZ, NGO0135
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Beta-hexosaminidase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: nagZ, NGO0135
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Beta-hexosaminidase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: nagZ, NGO0135
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Beta-hexosaminidase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: nagZ, NGO0135
    Database cross-references and differences (RAF-indexed):
  • Heterogens: C76, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jtkA (A:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefmtvphiprgpvmadiaafrlteee
kqrlldpaiggiilfrrnfqnieqlktltaeikalrtpeliiavdheggrvqrfiegftr
lpamnvlgqiwdkdgasaaetaagqvgrvlatelsacgidlsftpvldldwgncavignr
sfhrnpeavarlalalqkglakggmkscgkhfpghgfvegdshlvlpedgrsldeleaad
lapfrimsregmaavmpahvvypqvdtkpagfseiwlkqilrrdigfkgvifsddltmeg
acgaggikerarisfeagcdivlvcnrpdlvdelrdgftipdnqdlagrwqymenslghe
avqavmqtmgfqaaqafvaglaspqdtaggvkvgeaf

    Sequence, based on observed residues (ATOM records):
    >6jtkA (A:)
vphiprgpvmadiaafrlteeekqrlldpaiggiilfrrnfqnieqlktltaeikalrtp
eliiavdheggrvqrfiegftrlpamnvlgqiwdkdgasaaetaagqvgrvlatelsacg
idlsftpvldldwgncavignrsfhrnpeavarlalalqkglakggmkscgkhfpghgfv
egdvlpedgrsldeleaadlapfrimsregmaavmpahvvypqvdtkpagfseiwlkqil
rrdigfkgvifsddltgikerarisfeagcdivlvcnrpdlvdelrdgftipdnqdlagr
wqymenslgheavqavmqtmgfqaaqafvaglas

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jtkB (B:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefmtvphiprgpvmadiaafrlteee
kqrlldpaiggiilfrrnfqnieqlktltaeikalrtpeliiavdheggrvqrfiegftr
lpamnvlgqiwdkdgasaaetaagqvgrvlatelsacgidlsftpvldldwgncavignr
sfhrnpeavarlalalqkglakggmkscgkhfpghgfvegdshlvlpedgrsldeleaad
lapfrimsregmaavmpahvvypqvdtkpagfseiwlkqilrrdigfkgvifsddltmeg
acgaggikerarisfeagcdivlvcnrpdlvdelrdgftipdnqdlagrwqymenslghe
avqavmqtmgfqaaqafvaglaspqdtaggvkvgeaf

    Sequence, based on observed residues (ATOM records):
    >6jtkB (B:)
vphiprgpvmadiaafrlteeekqrlldpaiggiilfrrnfqnieqlktltaeikalrtp
eliiavdheggrvqrfiegftrlpamnvlgqiwdkdgasaaetaagqvgrvlatelsacg
idlsftpvldldwgncavignrsfhrnpeavarlalalqkglakggmkscgkhfpghgfv
egdshlvlpedgrsldeleaadlapfrimsregmaavmpahvvypqvdtkpagfseiwlk
qilrrdigfkgvifsddltmegacgaggikerarisfeagcdivlvcnrpdlvdelrdgf
tipdnqdlagrwqymenslgheavqavmqtmgfqaaqafvaglasp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jtkC (C:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefmtvphiprgpvmadiaafrlteee
kqrlldpaiggiilfrrnfqnieqlktltaeikalrtpeliiavdheggrvqrfiegftr
lpamnvlgqiwdkdgasaaetaagqvgrvlatelsacgidlsftpvldldwgncavignr
sfhrnpeavarlalalqkglakggmkscgkhfpghgfvegdshlvlpedgrsldeleaad
lapfrimsregmaavmpahvvypqvdtkpagfseiwlkqilrrdigfkgvifsddltmeg
acgaggikerarisfeagcdivlvcnrpdlvdelrdgftipdnqdlagrwqymenslghe
avqavmqtmgfqaaqafvaglaspqdtaggvkvgeaf

    Sequence, based on observed residues (ATOM records):
    >6jtkC (C:)
vphiprgpvmadiaafrlteeekqrlldpaiggiilfrrnfqnieqlktltaeikalrtp
eliiavdheggrvqrfiegftrlpamnvlgqiwdkdgasaaetaagqvgrvlatelsacg
idlsftpvldldwgncavignrsfhrnpeavarlalalqkglakggmkscgkhfpghgfv
egdshlvlpedgrsldeleaadlapfrimsregmaavmpahvvypqvdtkpagfseiwlk
qilrrdigfkgvifsddltaggikerarisfeagcdivlvcnrpdlvdelrdgftipdnq
dlagrwqymenslgheavqavmqtmgfqaaqafvaglas

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jtkD (D:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefmtvphiprgpvmadiaafrlteee
kqrlldpaiggiilfrrnfqnieqlktltaeikalrtpeliiavdheggrvqrfiegftr
lpamnvlgqiwdkdgasaaetaagqvgrvlatelsacgidlsftpvldldwgncavignr
sfhrnpeavarlalalqkglakggmkscgkhfpghgfvegdshlvlpedgrsldeleaad
lapfrimsregmaavmpahvvypqvdtkpagfseiwlkqilrrdigfkgvifsddltmeg
acgaggikerarisfeagcdivlvcnrpdlvdelrdgftipdnqdlagrwqymenslghe
avqavmqtmgfqaaqafvaglaspqdtaggvkvgeaf

    Sequence, based on observed residues (ATOM records):
    >6jtkD (D:)
tvphiprgpvmadiaafrlteeekqrlldpaiggiilfrrnfqnieqlktltaeikalrt
peliiavdheggrvqrfiegftrlpamnvlgqiwdkdgasaaetaagqvgrvlatelsac
gidlsftpvldldwgncavignrsfhrnpeavarlalalqkglakggmkscgkhfpghgf
vegdshlvlpedgrsldeleaadlapfrimsregmaavmpahvvypqvdtkpagfseiwl
kqilrrdigfkgvifsddltmcgaggikerarisfeagcdivlvcnrpdlvdelrdgfti
pdnqdlagrwqymenslgheavqavmqtmgfqaaqafvaglasp

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6jtkE (E:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefmtvphiprgpvmadiaafrlteee
kqrlldpaiggiilfrrnfqnieqlktltaeikalrtpeliiavdheggrvqrfiegftr
lpamnvlgqiwdkdgasaaetaagqvgrvlatelsacgidlsftpvldldwgncavignr
sfhrnpeavarlalalqkglakggmkscgkhfpghgfvegdshlvlpedgrsldeleaad
lapfrimsregmaavmpahvvypqvdtkpagfseiwlkqilrrdigfkgvifsddltmeg
acgaggikerarisfeagcdivlvcnrpdlvdelrdgftipdnqdlagrwqymenslghe
avqavmqtmgfqaaqafvaglaspqdtaggvkvgeaf

    Sequence, based on observed residues (ATOM records):
    >6jtkE (E:)
vphiprgpvmadiaafrlteeekqrlldpaiggiilfrrnfqnieqlktltaeikalrtp
eliiavdheggrvqrfiegftrlpamnvlgqiwdkdgasaaetaagqvgrvlatelsacg
idlsftpvldldwgncavignrsfhrnpeavarlalalqkglakggmkscgkhfpghgfv
egdshlvlpedgrsldeleaadlapfrimsregmaavmpahvvypqvdtkpagfseiwlk
qilrrdigfkgvifsddltmggikerarisfeagcdivlvcnrpdlvdelrdgftipdnq
dlagrwqymenslgheavqavmqtmgfqaaqafvaglas

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6jtkF (F:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefmtvphiprgpvmadiaafrlteee
kqrlldpaiggiilfrrnfqnieqlktltaeikalrtpeliiavdheggrvqrfiegftr
lpamnvlgqiwdkdgasaaetaagqvgrvlatelsacgidlsftpvldldwgncavignr
sfhrnpeavarlalalqkglakggmkscgkhfpghgfvegdshlvlpedgrsldeleaad
lapfrimsregmaavmpahvvypqvdtkpagfseiwlkqilrrdigfkgvifsddltmeg
acgaggikerarisfeagcdivlvcnrpdlvdelrdgftipdnqdlagrwqymenslghe
avqavmqtmgfqaaqafvaglaspqdtaggvkvgeaf

    Sequence, based on observed residues (ATOM records):
    >6jtkF (F:)
vphiprgpvmadiaafrlteeekqrlldpaiggiilfrrnfqnieqlktltaeikalrtp
eliiavdheggrvqrfiegftrlpamnvlgqiwdkdgasaaetaagqvgrvlatelsacg
idlsftpvldldwgncavignrsfhrnpeavarlalalqkglakggmkscgkhfpghgfv
egdshlvlpedgrsldeleaadlapfrimsregmaavmpahvvypqvdtkpagfseiwlk
qilrrdigfkgvifsddltmaggikerarisfeagcdivlvcnrpdlvdelrdgftipdn
qdlagrwqymenslgheavqavmqtmgfqaaqafvaglas