PDB entry 6jtc

View 6jtc on RCSB PDB site
Description: crystal structure of dipeptidyl peptidase 11 (dpp11) with sh-5 from porphyromonas gingivalis (space)
Deposited on 2019-04-10, released 2019-10-02
The last revision was dated 2019-10-02, with a file datestamp of 2019-09-27.
Experiment type: XRAY
Resolution: 2.39 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Asp/Glu-specific dipeptidyl-peptidase
    Species: Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) [TaxId:431947]
    Gene: dpp11, PGN_0607
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Asp/Glu-specific dipeptidyl-peptidase
    Species: Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) [TaxId:431947]
    Gene: dpp11, PGN_0607
    Database cross-references and differences (RAF-indexed):
  • Heterogens: C8O, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jtcA (A:)
mkkrlllplfaalclsqiahadegmwlmqqlgrkyaqmkerglkmkeydlynpngtslkd
avvlfdggctgevvsdrglvltnhhcgydmiqahstlehnylengfwamreadelpnkdi
svvfidkiedvtdyvkkelkaikdpnsmdylspkylqkladkkagknfsaknpglsveik
afyggnlylmftkktytdvrlvgappssigkfgadtdnwiwprhtgdfsifriyadkngn
papysednvplkpkrffnislggvqendyamimgfpgtthryftasevdewksidndiri
rmrdirqgvmlremladpqikimysakyaasqnaykraiganwaiktrglrqnkqamqdr
liawgakqgtpryeeavheidatvakradlrrrywmieegiirgiefarspiptedetka
lqgndasarkeaidkirtryskfankdysaevdkkvavamlteylkeipyenlplhlrlv
kdrfagdvqayvddifarsvfgseaqfdafaavpsveklaedpmvlfassvfdeyrklyn
elrpyddpilraqrtyiagllemdgdqdqfpdanltlrftygqvkgysprdnvyyghqtt
ldgvmekedpdnwefvvdpklkavyerkdfgryadrsgrmpvafcatthttggnsgspvm
nangeliglnfdrnwegvggdiqyladyqrsiivdiryvllvidkvggcqrlldemnivp

    Sequence, based on observed residues (ATOM records):
    >6jtcA (A:)
degmwlmqqlgrkyaqmkerglkmkeydlynpngtslkdavvlfdggctgevvsdrglvl
tnhhcgydmiqahstlehnylengfwamreadelpnkdisvvfidkiedvtdyvkkelka
ikdpnsmdylspkylqkladkkagknfsaknpglsveikafyggnlylmftkktytdvrl
vgappssigkfgadtdnwiwprhtgdfsifriyadkngnpapysednvplkpkrffnisl
ggvqendyamimgfpgtthryftasevdewksidndirirmrdirqgvmlremladpqik
imysakyaasqnaykraiganwaiktrglrqnkqamqdrliawgakqgtpryeeavheid
atvakradlrrrywmieegiirgiefarspiptedetkalqgndasarkeaidkirtrys
kfankdysaevdkkvavamlteylkeipyenlplhlrlvkdrfagdvqayvddifarsvf
gseaqfdafaavpsveklaedpmvlfassvfdeyrklynelrpyddpilraqrtyiagll
emdgdqdqfpdanltlrftygqvkgysprdnvyyghqttldgvmekedpdnwefvvdpkl
kavyerkdfgryadrsgrmpvafcatthttggnsgspvmnangeliglnfdrnwegvggd
iqyladyqrsiivdiryvllvidkvggcqrlldemnivp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jtcB (B:)
mkkrlllplfaalclsqiahadegmwlmqqlgrkyaqmkerglkmkeydlynpngtslkd
avvlfdggctgevvsdrglvltnhhcgydmiqahstlehnylengfwamreadelpnkdi
svvfidkiedvtdyvkkelkaikdpnsmdylspkylqkladkkagknfsaknpglsveik
afyggnlylmftkktytdvrlvgappssigkfgadtdnwiwprhtgdfsifriyadkngn
papysednvplkpkrffnislggvqendyamimgfpgtthryftasevdewksidndiri
rmrdirqgvmlremladpqikimysakyaasqnaykraiganwaiktrglrqnkqamqdr
liawgakqgtpryeeavheidatvakradlrrrywmieegiirgiefarspiptedetka
lqgndasarkeaidkirtryskfankdysaevdkkvavamlteylkeipyenlplhlrlv
kdrfagdvqayvddifarsvfgseaqfdafaavpsveklaedpmvlfassvfdeyrklyn
elrpyddpilraqrtyiagllemdgdqdqfpdanltlrftygqvkgysprdnvyyghqtt
ldgvmekedpdnwefvvdpklkavyerkdfgryadrsgrmpvafcatthttggnsgspvm
nangeliglnfdrnwegvggdiqyladyqrsiivdiryvllvidkvggcqrlldemnivp

    Sequence, based on observed residues (ATOM records):
    >6jtcB (B:)
degmwlmqqlgrkyaqmkerglkmkeydlynpngtslkdavvlfdggctgevvsdrglvl
tnhhcgydmiqahstlehnylengfwamreadelpnkdisvvfidkiedvtdyvkkelka
ikdpnsmdylspkylqkladkkagknfsaknpglsveikafyggnlylmftkktytdvrl
vgappssigkfgadtdnwiwprhtgdfsifriyadkngnpapysednvplkpkrffnisl
ggvqendyamimgfpgtthryftasevdewksidndirirmrdirqgvmlremladpqik
imysakyaasqnaykraiganwaiktrglrqnkqamqdrliawgakqgtpryeeavheid
atvakradlrrrywmieegiirgiefarspiptedetkalqgndasarkeaidkirtrys
kfankdysaevdkkvavamlteylkeipyenlplhlrlvkdrfagdvqayvddifarsvf
gseaqfdafaavpsveklaedpmvlfassvfdeyrklynelrpyddpilraqrtyiagll
emdgdqdqfpdanltlrftygqvkgysprdnvyyghqttldgvmekedpdnwefvvdpkl
kavyerkdfgryadrsgrmpvafcatthttggnsgspvmnangeliglnfdrnwegvggd
iqyladyqrsiivdiryvllvidkvggcqrlldemnivp