PDB entry 6jrp

View 6jrp on RCSB PDB site
Description: crystal structure of cic-hmg-etv5-dna complex
Deposited on 2019-04-05, released 2019-07-31
The last revision was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein capicua homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: CIC, KIAA0306
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA (5'-d(*ap*tp*gp*ap*ap*tp*gp*ap*ap*ap*a)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'C':
    Compound: DNA (5'-d(*tp*tp*tp*tp*cp*ap*tp*tp*cp*ap*t)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'D':
    Compound: Protein capicua homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: CIC, KIAA0306
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (5'-d(*ap*tp*gp*ap*ap*tp*gp*ap*ap*ap*a)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'F':
    Compound: DNA (5'-d(*tp*tp*tp*tp*cp*ap*tp*tp*cp*ap*t)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'G':
    Compound: Protein capicua homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: CIC, KIAA0306
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: DNA (5'-d(*ap*tp*gp*ap*ap*tp*gp*ap*ap*ap*a)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'I':
    Compound: DNA (5'-d(*tp*tp*tp*tp*cp*ap*tp*tp*cp*ap*t)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'J':
    Compound: Protein capicua homolog
    Species: Homo sapiens [TaxId:9606]
    Gene: CIC, KIAA0306
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: DNA (5'-d(*ap*tp*gp*ap*ap*tp*gp*ap*ap*ap*a)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'L':
    Compound: DNA (5'-d(*tp*tp*tp*tp*cp*ap*tp*tp*cp*ap*t)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jrpA (A:)
gshirrpmnafmifskrhralvhqrhpnqdnrtvskilgewwyalgpkekqkyhdlafqv
keahfkahpdwkwcnkdrkk

    Sequence, based on observed residues (ATOM records):
    >6jrpA (A:)
hirrpmnafmifskrhralvhqrhpnqdnrtvskilgewwyalgpkekqkyhdlafqvke
ahfkahpdwkwcnk

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jrpD (D:)
gshirrpmnafmifskrhralvhqrhpnqdnrtvskilgewwyalgpkekqkyhdlafqv
keahfkahpdwkwcnkdrkk

    Sequence, based on observed residues (ATOM records):
    >6jrpD (D:)
hirrpmnafmifskrhralvhqrhpnqdnrtvskilgewwyalgpkekqkyhdlafqvke
ahfkahpdwkwcnk

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6jrpG (G:)
gshirrpmnafmifskrhralvhqrhpnqdnrtvskilgewwyalgpkekqkyhdlafqv
keahfkahpdwkwcnkdrkk

    Sequence, based on observed residues (ATOM records):
    >6jrpG (G:)
hirrpmnafmifskrhralvhqrhpnqdnrtvskilgewwyalgpkekqkyhdlafqvke
ahfkahpdwkwcnk

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6jrpJ (J:)
gshirrpmnafmifskrhralvhqrhpnqdnrtvskilgewwyalgpkekqkyhdlafqv
keahfkahpdwkwcnkdrkk

    Sequence, based on observed residues (ATOM records):
    >6jrpJ (J:)
hirrpmnafmifskrhralvhqrhpnqdnrtvskilgewwyalgpkekqkyhdlafqvke
ahfkahpdwkwcnk

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.