PDB entry 6jri

View 6jri on RCSB PDB site
Description: Crystal structure of Nanobody
Class: antiviral protein
Keywords: Nanobody, therapeutic, ANTIVIRAL PROTEIN
Deposited on 2019-04-04, released 2020-05-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-05-06, with a file datestamp of 2020-05-01.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JRI (Start-129)
    Domains in SCOPe 2.08: d6jria_
  • Chain 'B':
    Compound: Nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JRI (Start-129)
    Domains in SCOPe 2.08: d6jrib_
  • Chain 'C':
    Compound: Nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JRI (Start-129)
    Domains in SCOPe 2.08: d6jric_
  • Chain 'D':
    Compound: Nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JRI (Start-129)
    Domains in SCOPe 2.08: d6jrid_
  • Chain 'E':
    Compound: Nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JRI (Start-129)
    Domains in SCOPe 2.08: d6jrie_
  • Chain 'F':
    Compound: Nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JRI (0-129)
    Domains in SCOPe 2.08: d6jrif_
  • Chain 'G':
    Compound: Nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JRI (Start-129)
    Domains in SCOPe 2.08: d6jrig_
  • Chain 'H':
    Compound: Nanobody
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JRI (Start-129)
    Domains in SCOPe 2.08: d6jrih_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6jriA (A:)
dvqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgs
ttyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiyw
gqgtqvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6jriA (A:)
vqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsttyyt
dsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiywgqgtq
vtvss

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6jriB (B:)
dvqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgs
ttyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiyw
gqgtqvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6jriB (B:)
vqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgst
tyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiywg
qgtqvtvss

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6jriC (C:)
dvqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgs
ttyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiyw
gqgtqvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6jriC (C:)
vqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgst
tyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiywg
qgtqvtvss

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6jriD (D:)
dvqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgs
ttyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiyw
gqgtqvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6jriD (D:)
vqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsmsgstty
ytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiywgqg
tqvtvss

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6jriE (E:)
dvqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgs
ttyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiyw
gqgtqvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6jriE (E:)
vqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsttyytds
vkgrftisrdnakntlylqmnslkpedtamyycaaaryrqvrwtdfiywgqgtqvtvss

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6jriF (F:)
dvqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgs
ttyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiyw
gqgtqvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6jriF (F:)
dvqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsttyy
tdsvkgrftisrdnakntlylqmnslkpedtamyycaaarqvrwtdfiywgqgtqvtvss

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6jriG (G:)
dvqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgs
ttyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiyw
gqgtqvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6jriG (G:)
vqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgst
tyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaarwtdfiywgqgtqvtvss

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6jriH (H:)
dvqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwsgsmsgs
ttyytdsvkgrftisrdnakntlylqmnslkpedtamyycaaaryrgigsqvrwtdfiyw
gqgtqvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6jriH (H:)
vqlvesggglvqaggslrlsctasgftfddytmgwfrqapgkeregvsytgwgsttyytd
svkgrftisrdnakntlylqmnslkpedtamyycaaarysqvrwtdfiywgqgtqvtvss