PDB entry 6jpu

View 6jpu on RCSB PDB site
Description: cryoem structure of abo1 hexamer - apo complex
Deposited on 2019-03-28, released 2019-12-25
The last revision was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: EM
Resolution: 4.27 Å
R-factor: N/A
AEROSPACI score: 0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uncharacterized AAA domain-containing protein C31G5.19
    Species: Schizosaccharomyces pombe 972h- [TaxId:284812]
    Gene: SPAC31G5.19
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Uncharacterized AAA domain-containing protein C31G5.19
    Species: Schizosaccharomyces pombe 972h- [TaxId:284812]
    Gene: SPAC31G5.19
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Uncharacterized AAA domain-containing protein C31G5.19
    Species: Schizosaccharomyces pombe 972h- [TaxId:284812]
    Gene: SPAC31G5.19
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Uncharacterized AAA domain-containing protein C31G5.19
    Species: Schizosaccharomyces pombe 972h- [TaxId:284812]
    Gene: SPAC31G5.19
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Uncharacterized AAA domain-containing protein C31G5.19
    Species: Schizosaccharomyces pombe 972h- [TaxId:284812]
    Gene: SPAC31G5.19
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Uncharacterized AAA domain-containing protein C31G5.19
    Species: Schizosaccharomyces pombe 972h- [TaxId:284812]
    Gene: SPAC31G5.19
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jpuA (A:)
gamgsgiqmkeeasehggsadetqelspvsdssdempnnakrrrrsqsmiankrihqafq
edegdedweeeehkpkakrryntrsnesfsegddepfevsessaledelsdsedsfirsv
rskpkykpgtrrstrlrnrrsqdeeeseeehrpilrertsrinysvplafppvdemdgdp
ssqvnqsrsrkthselaitkllrqqvssfmpyidssgsesesdntrikkssaktikaltd
pansggppdfgrireksdladsdplgvdsslsfesvggldnyinqlkemvmlpllypeif
qrfnmqpprgvlfhgppgtgktlmaralaaacssenkkvsfymrkgadclskwvgeaerq
lrllfeeakstqpsiiffdeidglapvrsskqeqihasivstllalmdgmesrgqviiig
atnrpdavdpalrrpgrfdrefyfplpdrdarkkiieihtrnwdppvpewlcsmlaeksk
gyggadlralcteaalnsikrtypqlyrstkrlqidpktikvkvkdfvmsmkrmipsser
ssispskplspelkpllneafqdiektlqklmpvasklnpleevmyddpkendfeyqqrl
etfetlriykprflicgrkglgqtalgpailqqyegvhvqsfdmstllqdstqsietsii
hlflevrrhtpsiiyipdidnwlnvlpltaittfssmlerldfsdqilflalsssplsel
hpqlrewfsskqsvyslqyptrdsiiaffqpilelikasptelpggiprkrrvlpelpla
pdpppftsqkitlkqtkqadmrllnklkiklnallgslraryrkfkkplidfndiycvdp
etghsyrsreechyefvddvvkqigsdqkfsmmsleeiekrtwdncyctpkqfvhdikli
lrdalqledsetikraqemyanvllgvedmeddqfsqrcermalreaerrklrhgklqkh
ldetkadmqftsekpsvdesitevddaikdgppvlaetltnslmedvgpenvdmdiedne
iftnqstmsvpsmlveneespkpdeyidqkdkvqspllngkspvgvpseaalrvstdvst
nissngradipvdtlitspadvpnnaptdahnitsadghienieqevvfpdlvfdedrlt
plkqllidsttgftvdqllhlhsflyqiiwntksewnrnsvvdeceravkefminalq

    Sequence, based on observed residues (ATOM records):
    >6jpuA (A:)
plgvdsslsfesvggldnyinqlkemvmlpllypeifqrfnmqpprgvlfhgppgtgktl
maralaaacssenkkvsfymrkgadclskwvgeaerqlrllfeeakstqpsiiffdeidg
lapvrsskqeqihasivstllalmdgmesrgqviiigatnrpdavdpalrrpgrfdrefy
fplpdrdarkkiieihtrnwdppvpewlcsmlaekskgyggadlralcteaalnsikrty
pqlyrstkrlqidpktikvkvkdfvmsmkrmipsserssispskplspelkpllneafqd
iektlqklmpvasklnpleevmyddpkendfeyqqrletfetlriykprflicgrkglgq
talgpailqqyegvhvqsfdmstllqdstqsietsiihlflevrrhtpsiiyipdidnwl
nvlpltaittfssmlerldfsdqilflalsssplselhpqlrewfsskqsvyslqyptrd
siiaffqpilelikasptelpggiprkrrvlpelplapedrltplkqllidsttgftvdq
llhlhsflyqiiwntksewnrnsvvdeceravkefmi

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jpuB (B:)
gamgsgiqmkeeasehggsadetqelspvsdssdempnnakrrrrsqsmiankrihqafq
edegdedweeeehkpkakrryntrsnesfsegddepfevsessaledelsdsedsfirsv
rskpkykpgtrrstrlrnrrsqdeeeseeehrpilrertsrinysvplafppvdemdgdp
ssqvnqsrsrkthselaitkllrqqvssfmpyidssgsesesdntrikkssaktikaltd
pansggppdfgrireksdladsdplgvdsslsfesvggldnyinqlkemvmlpllypeif
qrfnmqpprgvlfhgppgtgktlmaralaaacssenkkvsfymrkgadclskwvgeaerq
lrllfeeakstqpsiiffdeidglapvrsskqeqihasivstllalmdgmesrgqviiig
atnrpdavdpalrrpgrfdrefyfplpdrdarkkiieihtrnwdppvpewlcsmlaeksk
gyggadlralcteaalnsikrtypqlyrstkrlqidpktikvkvkdfvmsmkrmipsser
ssispskplspelkpllneafqdiektlqklmpvasklnpleevmyddpkendfeyqqrl
etfetlriykprflicgrkglgqtalgpailqqyegvhvqsfdmstllqdstqsietsii
hlflevrrhtpsiiyipdidnwlnvlpltaittfssmlerldfsdqilflalsssplsel
hpqlrewfsskqsvyslqyptrdsiiaffqpilelikasptelpggiprkrrvlpelpla
pdpppftsqkitlkqtkqadmrllnklkiklnallgslraryrkfkkplidfndiycvdp
etghsyrsreechyefvddvvkqigsdqkfsmmsleeiekrtwdncyctpkqfvhdikli
lrdalqledsetikraqemyanvllgvedmeddqfsqrcermalreaerrklrhgklqkh
ldetkadmqftsekpsvdesitevddaikdgppvlaetltnslmedvgpenvdmdiedne
iftnqstmsvpsmlveneespkpdeyidqkdkvqspllngkspvgvpseaalrvstdvst
nissngradipvdtlitspadvpnnaptdahnitsadghienieqevvfpdlvfdedrlt
plkqllidsttgftvdqllhlhsflyqiiwntksewnrnsvvdeceravkefminalq

    Sequence, based on observed residues (ATOM records):
    >6jpuB (B:)
plgvdsslsfesvggldnyinqlkemvmlpllypeifqrfnmqpprgvlfhgppgtgktl
maralaaacssenkkvsfymrkgadclskwvgeaerqlrllfeeakstqpsiiffdeidg
lapvrsskqeqihasivstllalmdgmesrgqviiigatnrpdavdpalrrpgrfdrefy
fplpdrdarkkiieihtrnwdppvpewlcsmlaekskgyggadlralcteaalnsikrty
pqlyrstkrlqidpktikvkvkdfvmsmkrmipsserssispskplspelkpllneafqd
iektlqklmpvasklnpleevmyddpkendfeyqqrletfetlriykprflicgrkglgq
talgpailqqyegvhvqsfdmstllqdstqsietsiihlflevrrhtpsiiyipdidnwl
nvlpltaittfssmlerldfsdqilflalsssplselhpqlrewfsskqsvyslqyptrd
siiaffqpilelikasptelpggiprkrrvlpelplapedrltplkqllidsttgftvdq
llhlhsflyqiiwntksewnrnsvvdeceravkefmi

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jpuC (C:)
gamgsgiqmkeeasehggsadetqelspvsdssdempnnakrrrrsqsmiankrihqafq
edegdedweeeehkpkakrryntrsnesfsegddepfevsessaledelsdsedsfirsv
rskpkykpgtrrstrlrnrrsqdeeeseeehrpilrertsrinysvplafppvdemdgdp
ssqvnqsrsrkthselaitkllrqqvssfmpyidssgsesesdntrikkssaktikaltd
pansggppdfgrireksdladsdplgvdsslsfesvggldnyinqlkemvmlpllypeif
qrfnmqpprgvlfhgppgtgktlmaralaaacssenkkvsfymrkgadclskwvgeaerq
lrllfeeakstqpsiiffdeidglapvrsskqeqihasivstllalmdgmesrgqviiig
atnrpdavdpalrrpgrfdrefyfplpdrdarkkiieihtrnwdppvpewlcsmlaeksk
gyggadlralcteaalnsikrtypqlyrstkrlqidpktikvkvkdfvmsmkrmipsser
ssispskplspelkpllneafqdiektlqklmpvasklnpleevmyddpkendfeyqqrl
etfetlriykprflicgrkglgqtalgpailqqyegvhvqsfdmstllqdstqsietsii
hlflevrrhtpsiiyipdidnwlnvlpltaittfssmlerldfsdqilflalsssplsel
hpqlrewfsskqsvyslqyptrdsiiaffqpilelikasptelpggiprkrrvlpelpla
pdpppftsqkitlkqtkqadmrllnklkiklnallgslraryrkfkkplidfndiycvdp
etghsyrsreechyefvddvvkqigsdqkfsmmsleeiekrtwdncyctpkqfvhdikli
lrdalqledsetikraqemyanvllgvedmeddqfsqrcermalreaerrklrhgklqkh
ldetkadmqftsekpsvdesitevddaikdgppvlaetltnslmedvgpenvdmdiedne
iftnqstmsvpsmlveneespkpdeyidqkdkvqspllngkspvgvpseaalrvstdvst
nissngradipvdtlitspadvpnnaptdahnitsadghienieqevvfpdlvfdedrlt
plkqllidsttgftvdqllhlhsflyqiiwntksewnrnsvvdeceravkefminalq

    Sequence, based on observed residues (ATOM records):
    >6jpuC (C:)
plgvdsslsfesvggldnyinqlkemvmlpllypeifqrfnmqpprgvlfhgppgtgktl
maralaaacssenkkvsfymrkgadclskwvgeaerqlrllfeeakstqpsiiffdeidg
lapvrsskqeqihasivstllalmdgmesrgqviiigatnrpdavdpalrrpgrfdrefy
fplpdrdarkkiieihtrnwdppvpewlcsmlaekskgyggadlralcteaalnsikrty
pqlyrstkrlqidpktikvkvkdfvmsmkrmipsserssispskplspelkpllneafqd
iektlqklmpvasklnpleevmyddpkendfeyqqrletfetlriykprflicgrkglgq
talgpailqqyegvhvqsfdmstllqdstqsietsiihlflevrrhtpsiiyipdidnwl
nvlpltaittfssmlerldfsdqilflalsssplselhpqlrewfsskqsvyslqyptrd
siiaffqpilelikasptelpggiprkrrvlpelplapedrltplkqllidsttgftvdq
llhlhsflyqiiwntksewnrnsvvdeceravkefmi

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jpuD (D:)
gamgsgiqmkeeasehggsadetqelspvsdssdempnnakrrrrsqsmiankrihqafq
edegdedweeeehkpkakrryntrsnesfsegddepfevsessaledelsdsedsfirsv
rskpkykpgtrrstrlrnrrsqdeeeseeehrpilrertsrinysvplafppvdemdgdp
ssqvnqsrsrkthselaitkllrqqvssfmpyidssgsesesdntrikkssaktikaltd
pansggppdfgrireksdladsdplgvdsslsfesvggldnyinqlkemvmlpllypeif
qrfnmqpprgvlfhgppgtgktlmaralaaacssenkkvsfymrkgadclskwvgeaerq
lrllfeeakstqpsiiffdeidglapvrsskqeqihasivstllalmdgmesrgqviiig
atnrpdavdpalrrpgrfdrefyfplpdrdarkkiieihtrnwdppvpewlcsmlaeksk
gyggadlralcteaalnsikrtypqlyrstkrlqidpktikvkvkdfvmsmkrmipsser
ssispskplspelkpllneafqdiektlqklmpvasklnpleevmyddpkendfeyqqrl
etfetlriykprflicgrkglgqtalgpailqqyegvhvqsfdmstllqdstqsietsii
hlflevrrhtpsiiyipdidnwlnvlpltaittfssmlerldfsdqilflalsssplsel
hpqlrewfsskqsvyslqyptrdsiiaffqpilelikasptelpggiprkrrvlpelpla
pdpppftsqkitlkqtkqadmrllnklkiklnallgslraryrkfkkplidfndiycvdp
etghsyrsreechyefvddvvkqigsdqkfsmmsleeiekrtwdncyctpkqfvhdikli
lrdalqledsetikraqemyanvllgvedmeddqfsqrcermalreaerrklrhgklqkh
ldetkadmqftsekpsvdesitevddaikdgppvlaetltnslmedvgpenvdmdiedne
iftnqstmsvpsmlveneespkpdeyidqkdkvqspllngkspvgvpseaalrvstdvst
nissngradipvdtlitspadvpnnaptdahnitsadghienieqevvfpdlvfdedrlt
plkqllidsttgftvdqllhlhsflyqiiwntksewnrnsvvdeceravkefminalq

    Sequence, based on observed residues (ATOM records):
    >6jpuD (D:)
plgvdsslsfesvggldnyinqlkemvmlpllypeifqrfnmqpprgvlfhgppgtgktl
maralaaacssenkkvsfymrkgadclskwvgeaerqlrllfeeakstqpsiiffdeidg
lapvrsskqeqihasivstllalmdgmesrgqviiigatnrpdavdpalrrpgrfdrefy
fplpdrdarkkiieihtrnwdppvpewlcsmlaekskgyggadlralcteaalnsikrty
pqlyrstkrlqidpktikvkvkdfvmsmkrmipsserssispskplspelkpllneafqd
iektlqklmpvasklnpleevmyddpkendfeyqqrletfetlriykprflicgrkglgq
talgpailqqyegvhvqsfdmstllqdstqsietsiihlflevrrhtpsiiyipdidnwl
nvlpltaittfssmlerldfsdqilflalsssplselhpqlrewfsskqsvyslqyptrd
siiaffqpilelikasptelpggiprkrrvlpelplapedrltplkqllidsttgftvdq
llhlhsflyqiiwntksewnrnsvvdeceravkefmi

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6jpuE (E:)
gamgsgiqmkeeasehggsadetqelspvsdssdempnnakrrrrsqsmiankrihqafq
edegdedweeeehkpkakrryntrsnesfsegddepfevsessaledelsdsedsfirsv
rskpkykpgtrrstrlrnrrsqdeeeseeehrpilrertsrinysvplafppvdemdgdp
ssqvnqsrsrkthselaitkllrqqvssfmpyidssgsesesdntrikkssaktikaltd
pansggppdfgrireksdladsdplgvdsslsfesvggldnyinqlkemvmlpllypeif
qrfnmqpprgvlfhgppgtgktlmaralaaacssenkkvsfymrkgadclskwvgeaerq
lrllfeeakstqpsiiffdeidglapvrsskqeqihasivstllalmdgmesrgqviiig
atnrpdavdpalrrpgrfdrefyfplpdrdarkkiieihtrnwdppvpewlcsmlaeksk
gyggadlralcteaalnsikrtypqlyrstkrlqidpktikvkvkdfvmsmkrmipsser
ssispskplspelkpllneafqdiektlqklmpvasklnpleevmyddpkendfeyqqrl
etfetlriykprflicgrkglgqtalgpailqqyegvhvqsfdmstllqdstqsietsii
hlflevrrhtpsiiyipdidnwlnvlpltaittfssmlerldfsdqilflalsssplsel
hpqlrewfsskqsvyslqyptrdsiiaffqpilelikasptelpggiprkrrvlpelpla
pdpppftsqkitlkqtkqadmrllnklkiklnallgslraryrkfkkplidfndiycvdp
etghsyrsreechyefvddvvkqigsdqkfsmmsleeiekrtwdncyctpkqfvhdikli
lrdalqledsetikraqemyanvllgvedmeddqfsqrcermalreaerrklrhgklqkh
ldetkadmqftsekpsvdesitevddaikdgppvlaetltnslmedvgpenvdmdiedne
iftnqstmsvpsmlveneespkpdeyidqkdkvqspllngkspvgvpseaalrvstdvst
nissngradipvdtlitspadvpnnaptdahnitsadghienieqevvfpdlvfdedrlt
plkqllidsttgftvdqllhlhsflyqiiwntksewnrnsvvdeceravkefminalq

    Sequence, based on observed residues (ATOM records):
    >6jpuE (E:)
plgvdsslsfesvggldnyinqlkemvmlpllypeifqrfnmqpprgvlfhgppgtgktl
maralaaacssenkkvsfymrkgadclskwvgeaerqlrllfeeakstqpsiiffdeidg
lapvrsskqeqihasivstllalmdgmesrgqviiigatnrpdavdpalrrpgrfdrefy
fplpdrdarkkiieihtrnwdppvpewlcsmlaekskgyggadlralcteaalnsikrty
pqlyrstkrlqidpktikvkvkdfvmsmkrmipsserssispskplspelkpllneafqd
iektlqklmpvasklnpleevmyddpkendfeyqqrletfetlriykprflicgrkglgq
talgpailqqyegvhvqsfdmstllqdstqsietsiihlflevrrhtpsiiyipdidnwl
nvlpltaittfssmlerldfsdqilflalsssplselhpqlrewfsskqsvyslqyptrd
siiaffqpilelikasptelpggiprkrrvlpelplapedrltplkqllidsttgftvdq
llhlhsflyqiiwntksewnrnsvvdeceravkefmi

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6jpuF (F:)
gamgsgiqmkeeasehggsadetqelspvsdssdempnnakrrrrsqsmiankrihqafq
edegdedweeeehkpkakrryntrsnesfsegddepfevsessaledelsdsedsfirsv
rskpkykpgtrrstrlrnrrsqdeeeseeehrpilrertsrinysvplafppvdemdgdp
ssqvnqsrsrkthselaitkllrqqvssfmpyidssgsesesdntrikkssaktikaltd
pansggppdfgrireksdladsdplgvdsslsfesvggldnyinqlkemvmlpllypeif
qrfnmqpprgvlfhgppgtgktlmaralaaacssenkkvsfymrkgadclskwvgeaerq
lrllfeeakstqpsiiffdeidglapvrsskqeqihasivstllalmdgmesrgqviiig
atnrpdavdpalrrpgrfdrefyfplpdrdarkkiieihtrnwdppvpewlcsmlaeksk
gyggadlralcteaalnsikrtypqlyrstkrlqidpktikvkvkdfvmsmkrmipsser
ssispskplspelkpllneafqdiektlqklmpvasklnpleevmyddpkendfeyqqrl
etfetlriykprflicgrkglgqtalgpailqqyegvhvqsfdmstllqdstqsietsii
hlflevrrhtpsiiyipdidnwlnvlpltaittfssmlerldfsdqilflalsssplsel
hpqlrewfsskqsvyslqyptrdsiiaffqpilelikasptelpggiprkrrvlpelpla
pdpppftsqkitlkqtkqadmrllnklkiklnallgslraryrkfkkplidfndiycvdp
etghsyrsreechyefvddvvkqigsdqkfsmmsleeiekrtwdncyctpkqfvhdikli
lrdalqledsetikraqemyanvllgvedmeddqfsqrcermalreaerrklrhgklqkh
ldetkadmqftsekpsvdesitevddaikdgppvlaetltnslmedvgpenvdmdiedne
iftnqstmsvpsmlveneespkpdeyidqkdkvqspllngkspvgvpseaalrvstdvst
nissngradipvdtlitspadvpnnaptdahnitsadghienieqevvfpdlvfdedrlt
plkqllidsttgftvdqllhlhsflyqiiwntksewnrnsvvdeceravkefminalq

    Sequence, based on observed residues (ATOM records):
    >6jpuF (F:)
plgvdsslsfesvggldnyinqlkemvmlpllypeifqrfnmqpprgvlfhgppgtgktl
maralaaacssenkkvsfymrkgadclskwvgeaerqlrllfeeakstqpsiiffdeidg
lapvrsskqeqihasivstllalmdgmesrgqviiigatnrpdavdpalrrpgrfdrefy
fplpdrdarkkiieihtrnwdppvpewlcsmlaekskgyggadlralcteaalnsikrty
pqlyrstkrlqidpktikvkvkdfvmsmkrmipsserssispskplspelkpllneafqd
iektlqklmpvasklnpleevmyddpkendfeyqqrletfetlriykprflicgrkglgq
talgpailqqyegvhvqsfdmstllqdstqsietsiihlflevrrhtpsiiyipdidnwl
nvlpltaittfssmlerldfsdqilflalsssplselhpqlrewfsskqsvyslqyptrd
siiaffqpilelikasptelpggiprkrrvlpelplapedrltplkqllidsttgftvdq
llhlhsflyqiiwntksewnrnsvvdeceravkefmi