PDB entry 6jpn

View 6jpn on RCSB PDB site
Description: crystal structure of the catalytic domain of a multi-domain alginate lyase dp0100 from thermophilic bacterium defluviitalea phaphyphila
Deposited on 2019-03-27, released 2019-10-30
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alginate lyase
    Species: Defluviitalea phaphyphila [TaxId:1473580]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JPN
  • Heterogens: MN, CA, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jpnA (A:)
lanyetydgfkvseepvlpekevhpslwftksdiqkikekknedsftaelweeisnspyl
tmeiptdipsatdsdtdihkyygnmsriakynafmylmtgkseyrlratealkrafdgpi
yemdptvsgsgvdeiyravwaqnfataydwiqpylsdeddeiirerlakeaqvvyenlyt
wgprphnalskpawglgtlaltlsdhpdaskwlnraleaantntlyffnkdghyregahy
yvyslvnlipflyhyknvsgvnyfpeyknifewavkirngrgwmpnvedswikpapthmv
asqykdtdtdlhstaklanilqwsyfntdfrpwepdgsytgasyddtwdidqyltydsti
eqikpdvsgtvfmnnsgqtvfrsdwnfnnpnsryllfqgvaeadnhyhydhlsfiihaen
qmmasdsgysrnsygegirtswyltaeahnvitangehpkdvsenttpvsrydmdtdffd
fqekeavydgftfpeknsydfsgkqiraigfprqdyfvvadqlfsdkevqydlylhggrg
emsgegnyrlwtyeddrygqeakmaawvfpskesifidkegevnyeagafnsygylnarq
iakdtmfmqiivplskyadipevvdlstddvvggtvvkdnekdtfmqqlnnaenslgdit
tdatfaytnensnnelqhfsvrqgtsldykgenifvsnkpitfaldisdetqykgtiaal
netvelrvknpvgvptesvvvngeniefsvedgytviqvaeggdininfgeg

    Sequence, based on observed residues (ATOM records):
    >6jpnA (A:)
anyetydgfkvseepvlpekevhpslwftksdiqkikekknedsftaelweeisnspylt
meiptdipsatdsdtdihkyygnmsriakynafmylmtgkseyrlratealkrafdgpiy
emdptvsgsgvdeiyravwaqnfataydwiqpylsdeddeiirerlakeaqvvyenlytw
gprphnalskpawglgtlaltlsdhpdaskwlnraleaantntlyffnkdghyregahyy
vyslvnlipflyhyknvsgvnyfpeyknifewavkirngrgwmpnvedswikpapthmva
sqykdtdtdlhstaklanilqwsyfntdfrpwepdgsytgasyddtwdidqyltydstie
qikpdvsgtvfmnnsgqtvfrsdwnfnnpnsryllfqgvaeadnhyhydhlsfiihaenq
mmasdsgysrnsygegirtswyltaeahnvitangehpkdvsenttpvsrydmdtdffdf
qekeavydgftfpeknsydfsgkqiraigfprqdyfvvadqlfsdkevqydlylhggrge
msgegnyrlwtyeddrygqeakmaawvfpskesifidkegevnyeagafnsygylnarqi
akdtmfmqiivplskyadipevvdlstddvvggtvvkdnekdtfmqqlnnaenslgditt
datfaytnensnnelqhfsvrqgtsldykgenifvsnkpitfaldisdetqykgtiaaln
etvelrvknpvgvptesvvvngeniefsvedgytviqvaeggdininfge