PDB entry 6jpl

View 6jpl on RCSB PDB site
Description: the x-ray structure of yeast trna methyltransferase trm7-trm734 in complex with s-adenosyl-l-methionine
Deposited on 2019-03-27, released 2019-10-02
The last revision was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 2.32 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (guanosine(34)-2'-O)-methyltransferase non-catalytic subunit TRM734
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: tRNA (cytidine(34)/guanosine(34)-2'-O)-methyltransferase
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: tRNA (guanosine(34)-2'-O)-methyltransferase non-catalytic subunit TRM734
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: tRNA (cytidine(34)/guanosine(34)-2'-O)-methyltransferase
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: EPE, SO4, SAM, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jplA (A:)
mkdlshygpalcvkfyndyvlagygpfihvydyhsatlinkcrlfhynkvhglslssegk
ilaygarsvtiveledvlkkeslvdferinsdwitgatfsfdnlqiylltcynkvlicdl
ncevlfrkslggersilysgiikvfgpdkvyvnagtvmggviiwdlfsetkihnllgheg
sifyvnlsnngryvascsddrsirlwdletgkqlsvgwshtariwnlmffdndsklisvs
edctcrvwniiesrenvaelsisnvyevhliksiwgvdvkddemiavtsgndgrlklidl
lqlkrhgdeetsfslddiakqcgdifeknesikgfqwfsfgviaitslgkilkysdvtkq
wkllltnekfnsypitngiqtqniavfsnnksdillikfskdsadiieteefhldelskt
nnclvteydddsflltlqspnprekfvcleislqnlkikskhcfnkpenfssscltsfrn
hilvgsrfstlviynlldeseepfiirrlspgdtttsiefvedkdnsavfsvtnrdgyyv
fieltknsleegpyrlsykvlhsnkmmkgflegaffnskgeyitygfksslfylynetnc
yelasevcggshrlwnlakitdghvlmyikasrfhlrkiynsivpetlengvhgreirdi
sicpvsntntndnfkdghifctasedttiklgyfnnrtgkvqnfwtqrkhvsglqrcqfi
nhklmisssareelflwelndkynkrpymtirqalpvstnnsdlrimdfdvkfisqsgdf
llvtvysdstikiwhyrenqnkfdlimqgryktcclfnvvfialkeellvvisptdghlv
vyniteyvpfsvdpisgdlvdhkldatisnlpapvaqlpvhqsgvksldyvanatrtsat
iltggddnglglsnlklddsnkvtlktsdfiaaaasstitsgmlinggkevittsvdqvi
raweitagklslvdkkrttvadtgsleiisndedadsektlliggvglsiwkklevlfqg
pshhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jplA (A:)
mkdlshygpalcvkfyndyvlagygpfihvydyhsatlinkcrlfhynkvhglslssegk
ilaygarsvtiveledvlkkeslvdferinsdwitgatfsfdnlqiylltcynkvlicdl
ncevlfrkslggersilysgiikvfgpdkvyvnagtvmggviiwdlfsetkihnllgheg
sifyvnlsnngryvascsddrsirlwdletgkqlsvgwshtariwnlmffdndsklisvs
edctcrvwniiesrenvaelsisnvyevhliksiwgvdvkddemiavtsgndgrlklidl
lqlkrhgdeetsfslddiakqcgdifeknesikgfqwfsfgviaitslgkilkysdvtkq
wkllltnekfnsypitngiqtqniavfsnnksdillikfskdsadiieteefhldelskt
nnclvteydddsflltlqspnprekfvcleislqnlkikskhcfnkpenfssscltsfrn
hilvgsrfstlviynlldeseepfiirrlspgdtttsiefvedkdnsavfsvtnrdgyyv
fieltknrlsykvlhsnkmmkgflegaffnskgeyitygfksslfylynetncyelasev
cggshrlwnlakitdghvlmyikasrfhlrkiynsivpetlengvhgreirdisicpvsn
tntndnfkdghifctasedttiklgyfnnrtgkvqnfwtqrkhvsglqrcqfinhklmis
ssareelflwelndkynkrpymtirqalpvsdlrimdfdvkfisqsgdfllvtvysdsti
kiwhyrenqnkfdlimqgryktcclfnvvfialkeellvvisptdghlvvyniteyvpfs
vdpisgdlvdhkldatisnlpapvaqlpvhqsgvksldyvanatrtsatiltggddnglg
lsnlklddsnkvtlktsdfiaaaasstitsgmlinggkevittsvdqviraweitagkls
lvdkkrttvadtgsleiisndsektlliggvglsiwkk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jplB (B:)
mgksskdkrdlyyrkakeqgyrarsafkllqlndqfhflddpnlkrvvdlcaapgswsqv
lsrklfdespssdkedrkivsvdlqpmspiphvttlqadithpktlarilklfgnekadf
vcsdgapdvtglhdldeyvqqqlimsalqltacilkkggtfvakifrgrdidmlysqlgy
lfdkivcakprssrgtsleafivclgynppsnwtpkldvntsvdeffqgcflnklcisdk
lshwneeerniaefmacgslqsfdsdatyhdlpssvagtsssldpvqsptnppykkalel
krsgkltrsvlevlfqgpshhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jplB (B:)
rdlyyrkakeqgyrarsafkllqlndqfhflddpnlkrvvdlcaapgswsqvlsrklfde
spssdkedrkivsvdlqpmspiphvttlqadithpktlarilklfgnekadfvcsdgapd
vtglhdldeyvqqqlimsalqltacilkkggtfvakifrgrdidmlysqlgylfdkivca
kprssrgtsleafivclgynppsnnklcisdklshwneeerniaefmacgs

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jplC (C:)
mkdlshygpalcvkfyndyvlagygpfihvydyhsatlinkcrlfhynkvhglslssegk
ilaygarsvtiveledvlkkeslvdferinsdwitgatfsfdnlqiylltcynkvlicdl
ncevlfrkslggersilysgiikvfgpdkvyvnagtvmggviiwdlfsetkihnllgheg
sifyvnlsnngryvascsddrsirlwdletgkqlsvgwshtariwnlmffdndsklisvs
edctcrvwniiesrenvaelsisnvyevhliksiwgvdvkddemiavtsgndgrlklidl
lqlkrhgdeetsfslddiakqcgdifeknesikgfqwfsfgviaitslgkilkysdvtkq
wkllltnekfnsypitngiqtqniavfsnnksdillikfskdsadiieteefhldelskt
nnclvteydddsflltlqspnprekfvcleislqnlkikskhcfnkpenfssscltsfrn
hilvgsrfstlviynlldeseepfiirrlspgdtttsiefvedkdnsavfsvtnrdgyyv
fieltknsleegpyrlsykvlhsnkmmkgflegaffnskgeyitygfksslfylynetnc
yelasevcggshrlwnlakitdghvlmyikasrfhlrkiynsivpetlengvhgreirdi
sicpvsntntndnfkdghifctasedttiklgyfnnrtgkvqnfwtqrkhvsglqrcqfi
nhklmisssareelflwelndkynkrpymtirqalpvstnnsdlrimdfdvkfisqsgdf
llvtvysdstikiwhyrenqnkfdlimqgryktcclfnvvfialkeellvvisptdghlv
vyniteyvpfsvdpisgdlvdhkldatisnlpapvaqlpvhqsgvksldyvanatrtsat
iltggddnglglsnlklddsnkvtlktsdfiaaaasstitsgmlinggkevittsvdqvi
raweitagklslvdkkrttvadtgsleiisndedadsektlliggvglsiwkklevlfqg
pshhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jplC (C:)
mkdlshygpalcvkfyndyvlagygpfihvydyhsatlinkcrlfhynkvhglslssegk
ilaygarsvtiveledvlkkeslvdferinsdwitgatfsfdnlqiylltcynkvlicdl
ncevlfrkslggersilysgiikvfgpdkvyvnagtvmggviiwdlfsetkihnllgheg
sifyvnlsnngryvascsddrsirlwdletgkqlsvgwshtariwnlmffdndsklisvs
edctcrvwniiesrenvaelsisnvyevhliksiwgvdvkddemiavtsgndgrlklidl
lqlkrhgdeetsfslddiakqcgdifeknesikgfqwfsfgviaitslgkilkysdvtkq
wkllltnekfnsypitngiqtqniavfsnnksdillikfskdsadiieteefhldelskt
nnclvteydddsflltlqspnprekfvcleislqnlkikskhcfnkpenfssscltsfrn
hilvgsrfstlviynlldeseepfiirrlspgdtttsiefvedkdnsavfsvtnrdgyyv
fieltknrlsykvlhsnkmmkgflegaffnskgeyitygfksslfylynetncyelasev
cggshrlwnlakitdghvlmyikasrfhlrkiynsivpetlengvhgreirdisicpvsn
tntndnfkdghifctasedttiklgyfnnrtgkvqnfwtqrkhvsglqrcqfinhklmis
ssareelflwelndkynkrpymtirqalpvsdlrimdfdvkfisqsgdfllvtvysdsti
kiwhyrenqnkfdlimqgryktcclfnvvfialkeellvvisptdghlvvyniteyvpfs
vdpisgdlvdhkldatisnlpapvaqlpvhqsgvksldyvanatrtsatiltggddnglg
lsnlklddsnkvtlktsdfiaaaasstitsgmlinggkevittsvdqviraweitagkls
lvdkkrttvadtgsleiisndsektlliggvglsiwkk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jplD (D:)
mgksskdkrdlyyrkakeqgyrarsafkllqlndqfhflddpnlkrvvdlcaapgswsqv
lsrklfdespssdkedrkivsvdlqpmspiphvttlqadithpktlarilklfgnekadf
vcsdgapdvtglhdldeyvqqqlimsalqltacilkkggtfvakifrgrdidmlysqlgy
lfdkivcakprssrgtsleafivclgynppsnwtpkldvntsvdeffqgcflnklcisdk
lshwneeerniaefmacgslqsfdsdatyhdlpssvagtsssldpvqsptnppykkalel
krsgkltrsvlevlfqgpshhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jplD (D:)
rdlyyrkakeqgyrarsafkllqlndqfhflddpnlkrvvdlcaapgswsqvlsrklfde
spssdkedrkivsvdlqpmspiphvttlqadithpktlarilklfgnekadfvcsdgapd
vtglhdldeyvqqqlimsalqltacilkkggtfvakifrgrdidmlysqlgylfdkivca
kprssrgtsleafivclgynppsnnklcisdklshwneeerniaefmacgs