PDB entry 6jph

View 6jph on RCSB PDB site
Description: crystal structure of the catalytic domain of a multi-domain alginate lyase dp0100 from thermophilic bacterium defluviitalea phaphyphila
Deposited on 2019-03-27, released 2019-10-30
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.76 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alginate lyase
    Species: Defluviitalea phaphyphila [TaxId:1473580]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JPH
  • Heterogens: MN, CA, ACT, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jphA (A:)
    lanyetydgfkvseepvlpekevhpslwftksdiqkikekknedsftaelweeisnspyl
    tmeiptdipsatdsdtdihkyygnmsriakynafmylmtgkseyrlratealkrafdgpi
    yemdptvsgsgvdeiyravwaqnfataydwiqpylsdeddeiirerlakeaqvvyenlyt
    wgprphnhlskpawglgtlaltlsdhpdaskwlnraleaantntlyffnkdghyregahy
    yvyslvnlipflyhyknvsgvnyfpeyknifewavkirngrgwmpnvedswikpapthmv
    asqykdtdtdlhstaklanilqwsyfntdfrpwepdgsytgasyddtwdidqyltydsti
    eqikpdvsgtvfmnnsgqtvfrsdwnfnnpnsryllfqgvaeadnhyhydhlsfiihaen
    qmmasdsgysrnsygegirtswyltaeahnvitangehpkdvsenttpvsrydmdtdffd
    fqekeavydgftfpeknsydfsgkqiraigfprqdyfvvadqlfsdkevqydlylhggrg
    emsgegnyrlwtyeddrygqeakmaawvfpskesifidkegevnyeagafnsygylnarq
    iakdtmfmqiivplskyadipevvdlstddvvggtvvkdnekdtfmqqlnnaenslgdit
    tdatfaytnensnnelqhfsvrqgtsldykgenifvsnkpitfaldisdetqykgtiaal
    netvelrvknpvgvptesvvvngeniefsvedgytviqvaeggdininfgeg
    

    Sequence, based on observed residues (ATOM records):
    >6jphA (A:)
    anyetydgfkvseepvlpekevhpslwftksdiqkikekknedsftaelweeisnspylt
    meiptdipsatdsdtdihkyygnmsriakynafmylmtgkseyrlratealkrafdgpiy
    emdptvsgsgvdeiyravwaqnfataydwiqpylsdeddeiirerlakeaqvvyenlytw
    gprphnhlskpawglgtlaltlsdhpdaskwlnraleaantntlyffnkdghyregahyy
    vyslvnlipflyhyknvsgvnyfpeyknifewavkirngrgwmpnvedswikpapthmva
    sqykdtdtdlhstaklanilqwsyfntdfrpwepdgsytgasyddtwdidqyltydstie
    qikpdvsgtvfmnnsgqtvfrsdwnfnnpnsryllfqgvaeadnhyhydhlsfiihaenq
    mmasdsgysrnsygegirtswyltaeahnvitangehpkdvsenttpvsrydmdtdffdf
    qekeavydgftfpeknsydfsgkqiraigfprqdyfvvadqlfsdkevqydlylhggrge
    msgegnyrlwtyeddrygqeakmaawvfpskesifidkegevnyeagafnsygylnarqi
    akdtmfmqiivplskyadipevvdlstddvvggtvvkdnekdtfmqqlnnaenslgditt
    datfaytnensnnelqhfsvrqgtsldykgenifvsnkpitfaldisdetqykgtiaaln
    etvelrvknpvgvptesvvvngeniefsvedgytviqvaeggdininfge