PDB entry 6jp4

View 6jp4 on RCSB PDB site
Description: crystal structure of the catalytic domain of a multi-domain alginate lyase dp0100 from thermophilic bacterium defluviitalea phaphyphila
Deposited on 2019-03-25, released 2019-10-30
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 2.07 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alginate lyase
    Species: Defluviitalea phaphyphila [TaxId:1473580]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JP4 (0-769)
  • Chain 'B':
    Compound: Alginate lyase
    Species: Defluviitalea phaphyphila [TaxId:1473580]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JP4 (0-769)
  • Chain 'C':
    Compound: Alginate lyase
    Species: Defluviitalea phaphyphila [TaxId:1473580]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JP4 (0-769)
  • Chain 'D':
    Compound: Alginate lyase
    Species: Defluviitalea phaphyphila [TaxId:1473580]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JP4 (0-769)
  • Heterogens: MN, MG, CA, ACT, EDO, CAC, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6jp4A (A:)
anyetydgfkvseepvlpekevhpslwftksdiqkikekknedsftaelweeisnspylt
meiptdipsatdsdtdihkyygnmsriakynafmylmtgkseyrlratealkrafdgpiy
emdptvsgsgvdeiyravwaqnfataydwiqpylsdeddeiirerlakeaqvvyenlytw
gprphnhlskpawglgtlaltlsdhpdaskwlnraleaantntlyffnkdghyregahyy
vyslvnlipflyhyknvsgvnyfpeyknifewavkirngrgwmpnvedswikpapthmva
sqykdtdtdlhstaklanilqwsyfntdfrpwepdgsytgasyddtwdidqyltydstie
qikpdvsgtvfmnnsgqtvfrsdwnfnnpnsryllfqgvaeadnhyhydhlsfiihaenq
mmasdsgysrnsygegirtswyltaeahnvitangehpkdvsenttpvsrydmdtdffdf
qekeavydgftfpeknsydfsgkqiraigfprqdyfvvadqlfsdkevqydlylhggrge
msgegnyrlwtyeddrygqeakmaawvfpskesifidkegevnyeagafnsygylnarqi
akdtmfmqiivplskyadipevvdlstddvvggtvvkdnekdtfmqqlnnaenslgditt
datfaytnensnnelqhfsvrqgtsldykgenifvsnkpitfaldisdetqykgtiaaln
etvelrvknpvgvptesvvvngeniefsvedgytviqvaeggdininfge

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6jp4B (B:)
anyetydgfkvseepvlpekevhpslwftksdiqkikekknedsftaelweeisnspylt
meiptdipsatdsdtdihkyygnmsriakynafmylmtgkseyrlratealkrafdgpiy
emdptvsgsgvdeiyravwaqnfataydwiqpylsdeddeiirerlakeaqvvyenlytw
gprphnhlskpawglgtlaltlsdhpdaskwlnraleaantntlyffnkdghyregahyy
vyslvnlipflyhyknvsgvnyfpeyknifewavkirngrgwmpnvedswikpapthmva
sqykdtdtdlhstaklanilqwsyfntdfrpwepdgsytgasyddtwdidqyltydstie
qikpdvsgtvfmnnsgqtvfrsdwnfnnpnsryllfqgvaeadnhyhydhlsfiihaenq
mmasdsgysrnsygegirtswyltaeahnvitangehpkdvsenttpvsrydmdtdffdf
qekeavydgftfpeknsydfsgkqiraigfprqdyfvvadqlfsdkevqydlylhggrge
msgegnyrlwtyeddrygqeakmaawvfpskesifidkegevnyeagafnsygylnarqi
akdtmfmqiivplskyadipevvdlstddvvggtvvkdnekdtfmqqlnnaenslgditt
datfaytnensnnelqhfsvrqgtsldykgenifvsnkpitfaldisdetqykgtiaaln
etvelrvknpvgvptesvvvngeniefsvedgytviqvaeggdininfge

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6jp4C (C:)
anyetydgfkvseepvlpekevhpslwftksdiqkikekknedsftaelweeisnspylt
meiptdipsatdsdtdihkyygnmsriakynafmylmtgkseyrlratealkrafdgpiy
emdptvsgsgvdeiyravwaqnfataydwiqpylsdeddeiirerlakeaqvvyenlytw
gprphnhlskpawglgtlaltlsdhpdaskwlnraleaantntlyffnkdghyregahyy
vyslvnlipflyhyknvsgvnyfpeyknifewavkirngrgwmpnvedswikpapthmva
sqykdtdtdlhstaklanilqwsyfntdfrpwepdgsytgasyddtwdidqyltydstie
qikpdvsgtvfmnnsgqtvfrsdwnfnnpnsryllfqgvaeadnhyhydhlsfiihaenq
mmasdsgysrnsygegirtswyltaeahnvitangehpkdvsenttpvsrydmdtdffdf
qekeavydgftfpeknsydfsgkqiraigfprqdyfvvadqlfsdkevqydlylhggrge
msgegnyrlwtyeddrygqeakmaawvfpskesifidkegevnyeagafnsygylnarqi
akdtmfmqiivplskyadipevvdlstddvvggtvvkdnekdtfmqqlnnaenslgditt
datfaytnensnnelqhfsvrqgtsldykgenifvsnkpitfaldisdetqykgtiaaln
etvelrvknpvgvptesvvvngeniefsvedgytviqvaeggdininfge

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6jp4D (D:)
anyetydgfkvseepvlpekevhpslwftksdiqkikekknedsftaelweeisnspylt
meiptdipsatdsdtdihkyygnmsriakynafmylmtgkseyrlratealkrafdgpiy
emdptvsgsgvdeiyravwaqnfataydwiqpylsdeddeiirerlakeaqvvyenlytw
gprphnhlskpawglgtlaltlsdhpdaskwlnraleaantntlyffnkdghyregahyy
vyslvnlipflyhyknvsgvnyfpeyknifewavkirngrgwmpnvedswikpapthmva
sqykdtdtdlhstaklanilqwsyfntdfrpwepdgsytgasyddtwdidqyltydstie
qikpdvsgtvfmnnsgqtvfrsdwnfnnpnsryllfqgvaeadnhyhydhlsfiihaenq
mmasdsgysrnsygegirtswyltaeahnvitangehpkdvsenttpvsrydmdtdffdf
qekeavydgftfpeknsydfsgkqiraigfprqdyfvvadqlfsdkevqydlylhggrge
msgegnyrlwtyeddrygqeakmaawvfpskesifidkegevnyeagafnsygylnarqi
akdtmfmqiivplskyadipevvdlstddvvggtvvkdnekdtfmqqlnnaenslgditt
datfaytnensnnelqhfsvrqgtsldykgenifvsnkpitfaldisdetqykgtiaaln
etvelrvknpvgvptesvvvngeniefsvedgytviqvaeggdininfge