SCOPe 2.08: Structural Classification of Proteins

PDB entry 6jo5

View 6jo5 on RCSB PDB site
Description: Structure of the green algal photosystem I supercomplex with light-harvesting complex I
Class: photosynthesis
Keywords: photosystem membrane protein, PHOTOSYNTHESIS
Deposited on 2019-03-20, released 2019-06-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-06-26, with a file datestamp of 2019-06-21.
Experiment type: EM
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

Chain '1':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: cabI-1
Database cross-references and differences (RAF-indexed):
- Uniprot Q7DM26 (0-193)
Domains in SCOPe 2.08: d6jo51_
Chain '2':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: LHCA2, CHLRE_12g508750v5, CHLREDRAFT_144609
Database cross-references and differences (RAF-indexed):
- Uniprot A8IKC8
Chain '3':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: LHCA3, CHLREDRAFT_153678
Database cross-references and differences (RAF-indexed):
- Uniprot A8JF10
Domains in SCOPe 2.08: d6jo53_
Chain '4':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: LhcI-1, CHLRE_10g452050v5
Database cross-references and differences (RAF-indexed):
- Uniprot Q75VZ0
Domains in SCOPe 2.08: d6jo54_
Chain '5':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: LhcI-3, LHCA5, CHLRE_10g425900v5, CHLREDRAFT_186299
Database cross-references and differences (RAF-indexed):
- Uniprot Q75VY8
Domains in SCOPe 2.08: d6jo55_
Chain '6':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: LhcI-5, LHCA6, CHLRE_06g278213v5, CHLREDRAFT_192961
Database cross-references and differences (RAF-indexed):
- Uniprot Q75VY6 (Start-231)
Chain '7':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: Lhca, CHLRE_16g687900v5
Database cross-references and differences (RAF-indexed):
- Uniprot Q84Y02
Domains in SCOPe 2.08: d6jo57_
Chain '8':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: LhcI-4, LHCA8, CHLRE_06g272650v5, CHLREDRAFT_187025
Database cross-references and differences (RAF-indexed):
- Uniprot Q75VY7 (0-216)
Domains in SCOPe 2.08: d6jo58_
Chain '9':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8S567
Domains in SCOPe 2.08: d6jo59_
Chain 'A':
Compound: photosystem I p700 chlorophyll a apoprotein a1
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: psaA, ps1a1
Database cross-references and differences (RAF-indexed):
- Uniprot P12154 (Start-750)
Domains in SCOPe 2.08: d6jo5a_
Chain 'B':
Compound: photosystem I p700 chlorophyll a apoprotein a2
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: psaB, ps1a2
Database cross-references and differences (RAF-indexed):
- Uniprot P09144
  - insertion (22)
Domains in SCOPe 2.08: d6jo5b_
Chain 'C':
Compound: photosystem I iron-sulfur center
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: psac
Database cross-references and differences (RAF-indexed):
- Uniprot Q00914 (Start-80)
Domains in SCOPe 2.08: d6jo5c_
Chain 'D':
Compound: photosystem I reaction center subunit II, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: psaD
Database cross-references and differences (RAF-indexed):
- Uniprot Q39615 (Start-160)
Domains in SCOPe 2.08: d6jo5d_
Chain 'E':
Compound: Photosystem I reaction center subunit IV, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: PSAE
Database cross-references and differences (RAF-indexed):
- Uniprot P12352
Domains in SCOPe 2.08: d6jo5e_
Chain 'F':
Compound: Photosystem I reaction center subunit F, Photosystem I reaction center subunit III, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: PSAF
Database cross-references and differences (RAF-indexed):
- Uniprot P12356 (0-164)
Domains in SCOPe 2.08: d6jo5f_
Chain 'G':
Compound: photosystem I reaction center subunit v, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: PSAG
Database cross-references and differences (RAF-indexed):
- Uniprot P14224
Chain 'I':
Compound: Photosystem I reaction center subunit VIII
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: PSAI
Database cross-references and differences (RAF-indexed):
- Uniprot A8IFG7
Chain 'J':
Compound: Photosystem I reaction center subunit IX
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: psaJ
Database cross-references and differences (RAF-indexed):
- Uniprot P59777 (0-End)
Domains in SCOPe 2.08: d6jo5j_
Chain 'K':
Compound: photosystem I reaction center subunit psak, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: PSAK
Database cross-references and differences (RAF-indexed):
- Uniprot P14225
Chain 'L':
Compound: Photosystem I reaction center subunit XI
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: PSAL, CHLRE_12g486300v5, CHLREDRAFT_205935
Database cross-references and differences (RAF-indexed):
- Uniprot A8IL32
Domains in SCOPe 2.08: d6jo5l_
Chain 'Z':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: Chlamydomonas reinhardtii [TaxId:3055]
Gene: cabI-1
Database cross-references and differences (RAF-indexed):
- Uniprot Q7DM26 (0-193)
Domains in SCOPe 2.08: d6jo5z_
Heterogens: CL0, CLA, PQN, LHG, BCR, SF4, DGD, LMG, CHL, LUT

PDB Chain Sequences:

Chain '1':
Sequence; same for both SEQRES and ATOM records: (download)

>6jo51 (1:)
kagnwlpgsdapawlpddlpgnygfdplslgkepaslkrftesevihgrwamlgvagsla
vellgygnwydaplwavnggkatwfgievpfdlnallafefvamaaaegqrgdaggvvyp
ggafdplgfakdssksgelklkeikngrlamvaflgfvaqhaatgkgpiaalgehlanpw
ganfatngisvpff

Chain '2':
No sequence available.

Chain '3':
Sequence, based on SEQRES records: (download)

>6jo53 (3:)
eeksiakvdrskdqlyvgasqsslayldgslpgdfgfdplglldpvnsggfiepkwlqys
eviharwamlgaagciapevlgaaglipdatnikwfesgvippagsyngywadpytiffv
eivamqfaelrrlqdfrypgsmgqqyflgleaifkgsgdaaypggpffnlfnlgkteaam
kelklkeikngrlamlamlgygaqavmtgkgpfqnlvehladpvnnniltnfagrvsgss
qpwrphgwwrrryrsvaalalirnrsvc

Sequence, based on observed residues (ATOM records): (download)

>6jo53 (3:)
lpgdfgfdplglldpvnsggfiepkwlqyseviharwamlgaagciapevlgaaglipda
tnikwfesgvippagsyngywadpytiffveivamqfaelrrlqdfrypgsmgqqyflgl
eaifkgsgdaaypggpffnlfnlgkteaamkelklkeikngrlamlamlgygaqavmtgk
gpfqnlvehladpvnnniltnf

Chain '4':
Sequence, based on SEQRES records: (download)

>6jo54 (4:)
savpenvkearewidawksksggakrdaalpswmpgadlpgylngtlpgdfgfdplylgq
dpvklkwyaqaelmnarfamlavagilvpellsnigfswpgagvawydagkfeyfapass
lfgvqmllfawveirryqdfvkpgsanqdpiftnnklpdgnepgypggifdpfgwskgdi
kslklkeikngrlamlafagfigqayttgttplknlsthladpwsttvwqndlarl

Sequence, based on observed residues (ATOM records): (download)

>6jo54 (4:)
lpswmpgadlpgylngtlpgdfgfdplylgqdpvklkwyaqaelmnarfamlavagilvp
ellsnigpgagvawydagkfeyfapasslfgvqmllfawveirryqdfvkpgsanqdpif
tnnklpdgnepgypggifdpfgwskgdikslklkeikngrlamlafagfigqayttgttp
lknlsthladpwsttvwqndlar

Chain '5':
Sequence, based on SEQRES records: (download)

>6jo55 (5:)
aadrklwapgvvapeylkgdlagdygwdplglgadptalkwyrqselqharwamlgvagv
lvqeivkpdvyfyeaglpqnlpepftninmggllawefilmhwvevrrwqdyknfgsvne
dpifkgnkvpnpemgypggifdpfgfskgnlkelqtkeikngrlamiaymafilqaqatg
kgplaalsahlsnpfgnnilknigtctvphsvdvqgltipltclwpgsq

Sequence, based on observed residues (ATOM records): (download)

>6jo55 (5:)
rklwapgvvapeylkgdlagdygwdplglgadptalkwyrqselqharwamlgvagvlvq
eivkpdvyfyeaglpqnlpepftninmggllawefilmhwvevrrwqdyknfgsvnedpi
fkgnkvpnpemgypggifdpfgfsnlkelqtkeikngrlamiaymafilqaqatgkgpla
alsahlsnpfgnnilknigtctvphsvdvqgltipltclwpgs

Chain '6':
No sequence available.

Chain '7':
Sequence, based on SEQRES records: (download)

>6jo57 (7:)
aavrpvwfpgnpppahldgslagdygfdplflgqepqtlkwyvqaelvhgrfamlgaagi
iltsigakvglgfpewydagkvvveknnidfptlmviqfylmgwaetkrwydfknpgsqa
dgsflgfteefkglengypggrffdpmglsrgdaakyqeykqkevkngrlamiaclgfaa
qyaatgkgpldnladhladpnhvnfatngvsipia

Sequence, based on observed residues (ATOM records): (download)

>6jo57 (7:)
vrpvwfpgnpppahldgslagdygfdplflgqepqtlkwyvqaelvhgrfamlgaagiil
tsigakvglgfpewydagkvvveknnidfptlmviqfylmgwaetkrwydfknpgsqadg
sflgfteefkglengypggrffdpmglsrgdaakyqeykqkevkngrlamiaclgfaaqy
aatgkgpldnladhladpnhvnfatngvsipi

Chain '8':
Sequence; same for both SEQRES and ATOM records: (download)

>6jo58 (8:)
rqswlpgsqipahldtpaaqalagnfgfdplglgkdpvalrwyqqaelihcrtamagvag
ilipglltkagalnvpewydagkvaiensfapwgsllavqlflcgfveakrwqdirkpgs
qgepgsflgfeaslkgtselgypggpfdplglskeadkwadwklkevkngrlamlaflgf
vaqkyatgagpvdnlaahlkdpwhvnyatngvslpfl

Chain '9':
Sequence, based on SEQRES records: (download)

>6jo59 (9:)
asarptwlpglnppahlkgalagdngfdplglgqdegrlkwyaeaektngrwammavagi
lgqellgvtpawweagakeydipaqaltpiefivmgfleikryqgfkqtgtsgfinsfpf
dpagmnspsmatkevkngrlamvafigfcvqalatrtqpiegltahladpfgknityylt
hlpetlgsa

Sequence, based on observed residues (ATOM records): (download)

>6jo59 (9:)
twlpglnppagdngfdplglgqdegrlkwyaeaektngrwammavagilgqellpawwea
gakeydipaqaltpiefivmgfleikryqgfnspsmatkevkngrlamvafigfcvqala
trtqpiegltahladpfgknityylthlpetl

Chain 'A':
Sequence, based on SEQRES records: (download)

>6jo5A (A:)
mtistpereakkvkiavdrnpvetsfekwakpghfsrtlskgpntttwiwnlhadahdfd
shtsdleeisrkvfsahfgqlgiifiwlsgmyfhgarfsnyeawlsdpthikpsaqvvwp
ivgqeilngdvgggfqgiqitsgffqlwrasgitselqlyttaigglvmaaamffagwfh
yhkaapklewfqnvesmlnhhlggllglgslawaghqihvslpvnklldagvdpkeiplp
hdlllnraimadlypsfakgiapfftlnwseysdfltfkgglnpvtgglwlsdtahhhva
iavlflvaghmyrtnwgighsmkeileahrgpftgeghvglyeilttswhaqlainlalf
gslsiivahhmyamppypylatdygtqlslfthhtwiggfcivgagahaaifmvrdydpt
nnynnlldrvirhrdaiishlnwvciflgfhsfglyihndtmsalgrpqdmfsdtaiqlq
pvfaqwiqnthflapqltapnalaatsltwggdlvavggkvammpislgtsdfmvhhiha
ftihvtvlillkgvlfarssrlipdkanlgfrfpcdgpgrggtcqvsawdhvflglfwmy
nslsivifhfswkmqsdvwgtvtasgvshitggnfaqsantingwlrdflwaqssqviqs
ygsalsaygliflgahfvwafslmflfsgrgywqeliesivwahnklkvapaiqpralsi
tqgravgvahyllggiattwsfflariisvg

Sequence, based on observed residues (ATOM records): (download)

>6jo5A (A:)
kvkiavdrnpvetsfekwakpghfsrtlskgpntttwiwnlhadahdfdshtsdleeisr
kvfsahfgqlgiifiwlsgmyfhgarfsnyeawlsdpthikpsaqvvwpivgqeilngdv
gggfqgiqitsgffqlwrasgitselqlyttaigglvmaaamffagwfhyhkaapklewf
qnvesmlnhhlggllglgslawaghqihvslpvnklldagvdpkeiplphdlllnraima
dlypsfakgiapfftlnwseysdfltfkgglnpvtgglwlsdtahhhvaiavlflvaghm
yrtnwgighsmkeileahrgpftgeghvglyeilttswhaqlainlalfgslsiivahhm
yamppypylatdygtqlslfthhtwiggfcivgagahaaifmvrdydptnnynnlldrvi
rhrdaiishlnwvciflgfhsfglyihndtmsalgrpqdmfsdtaiqlqpvfaqwiqnth
flapqltapnalaatsltwggdlvavggkvammpislgtsdfmvhhihaftihvtvlill
kgvlfarssrlipdkanlgfrfpcdgpgrggtcqvsawdhvflglfwmynslsivifhfs
wkmqsdvwgtvtgvshitggnfaqsantingwlrdflwaqssqviqsygsalsayglifl
gahfvwafslmflfsgrgywqeliesivwahnklkvapaiqpralsitqgravgvahyll
ggiattwsfflariisvg

Chain 'B':
Sequence, based on SEQRES records: (download)

>6jo5B (B:)
mathhhhhhhhhhhhhhhhhhhhklfpkfsqglaqdpttrriwyglamahdfeshdgmte
enlyqkifashfgqlsiiflwtsgnlfhvawqgnfeqwvtdpvhirpiahaiwdphfgqp
aveaftrggasgpvnistsgvyqwwytigmrtnqdlyvgsvflalvsaiflfagwlhlqp
nfqpslswfkdaesrlnhhlsglfgvsslawtghlvhvaipesrgqhvgwdnflsvlphp
qgltpfftgnwaayaqspdtashvfgtaqgsgqailtflggfhpqtqslwltdmahhhla
iavifivaghmyrtnfgighrmqaileahtppsgslgaghkglfdtvnnslhfqlglala
svgtitslvaqhmyslppyafqaidfttqaalythhqyiagfimcgafahgaiffirdyd
peqnkgnvlarmldhkealishlswvslflgfhtlglyvhndvmqafgtpekqiliepvf
aqwiqaahgkalygfdfllssktsaafangqslwlpgwldainnnqnslfltigpgdflv
hhaialglhtttlilvkgaldargsklmpdkkdfgysfpcdgpgrggtcdisaydafyla
vfwmlntigwvtfywhwkhltlwqgnvaqfdesstylmgwlrdylwlnssqlingynpfg
mnslsvwawtflfghliyatgfmfliswrgywqelietlvwahektplanlvywkdkpva
lsivqarlvglahfsvgyiftyaafliastsgrfg

Sequence, based on observed residues (ATOM records): (download)

>6jo5B (B:)
hklfpkfsqglaqdpttrriwyglamahdfeshdgmteenlyqkifashfgqlsiiflwt
sgnlfhvawqgnfeqwvtdpvhirpiahaiwdphfgqpaveaftrggasgpvnistsgvy
qwwytigmrtnqdlyvgsvflalvsaiflfagwlhlqpnfqpslswfkdaesrlnhhlsg
lfgvsslawtghlvhvaipesrgqhvgwdnflsvlphpqgltpfftgnwaayaqspdtas
hvfgtaqgsgqailtflggfhpqtqslwltdmahhhlaiavifivaghmyrtnfgighrm
qaileahtppsgslgaghkglfdtvnnslhfqlglalasvgtitslvaqhmyslppyafq
aidfttqaalythhqyiagfimcgafahgaiffirdydpeqnkgnvlarmldhkealish
lswvslflgfhtlglyvhndvmqafgtpekqiliepvfaqwiqaahgkalygfdfllssk
tsaafangqslwlpgwldainnnqnslfltigpgdflvhhaialglhtttlilvkgalda
rgsklmpdkkdfgysfpcdgpgrggtcdisaydafylavfwmlntigwvtfywhwkhltl
wqgnvaqfdesstylmgwlrdylwlnssqlingynpfgmnslsvwawtflfghliyatgf
mfliswrgywqelietlvwahektplanlvywkdkpvalsivqarlvglahfsvgyifty
aafliastsgrf

Chain 'C':
Sequence, based on SEQRES records: (download)

>6jo5C (C:)
mahivkiydtcigctqcvracpldvlemvpwdgckasqmasaprtedcvgckrcetacpt
dflsvrvylgsestrsmglsy

Sequence, based on observed residues (ATOM records): (download)

>6jo5C (C:)
ahivkiydtcigctqcvracpldvlemvpwdgckasqmasaprtedcvgckrcetacptd
flsvrvylgsestrsmglsy

Chain 'D':
Sequence, based on SEQRES records: (download)

>6jo5D (D:)
eaeaapaaakkaaekpawtvptlnpdtpspifggstggllrkaqteefyvitweakkeqi
femptggaaimrqgpnllkfgkkeqclalttqlrnkfkltpcfyrvfpdgkvqylhpadg
vypekvnagrvganqnmrrigqnvnpikvkfsgrmmspaei

Sequence, based on observed residues (ATOM records): (download)

>6jo5D (D:)
wtvptlnpdtpspifggstggllrkaqteefyvitweakkeqifemptggaaimrqgpnl
lkfgkkeqclalttqlrnkfkltpcfyrvfpdgkvqylhpadgvypekvnagrvganqnm
rrigqnvnpikvkfsgrmmspaei

Chain 'E':
Sequence, based on SEQRES records: (download)

>6jo5E (E:)
eevkaapkkevgpkrgslvkilrpesywfnqvgkvvsvdqsgvrypvvvrfenqnyagvt
tnnyaldevvaak

Sequence, based on observed residues (ATOM records): (download)

>6jo5E (E:)
gpkrgslvkilrpesywfnqvgkvvsvdqsgvrypvvvrfenqnyagvttnnyaldevva
a

Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)

>6jo5F (F:)
diagltpcseskayaklekkelktlekrlkqyeadsapavalkatmertkarfanyakag
llcgndglphliadpglalkyghagevfiptfgflyvagyigyvgrqyliavkgeakptd
keiiidvplatklawqgagwplaavqelqrgtllekeenitvspr

Chain 'G':
No sequence available.
Chain 'I':
No sequence available.
Chain 'J':
Sequence, based on SEQRES records: (download)
```
>6jo5J (J:)
mkdfttylstapviatiwftftagllieinryfpdplvfsf
```
Sequence, based on observed residues (ATOM records): (download)
```
>6jo5J (J:)
mkdfttylstapviatiwftftagllieinryfpdplvf
```
Chain 'K':
No sequence available.

Chain 'L':
Sequence, based on SEQRES records: (download)

>6jo5L (L:)
qvispvngdpfvgmletpvtsapivatylsnlpayrtgvapvlrgveiglahgfllagpf
iklgplrnvpetaeiagslsaaglvlilalclsiygsaqfqstpsigvktlsgrsvardp
lfsadgwsefaagflvggeagvawayvctqilpyys

Sequence, based on observed residues (ATOM records): (download)

>6jo5L (L:)
gmletpvtsapivatylsnlpayrtgvapvlrgveiglahgfllagpfiklgplrnvpet
aeiagslsaaglvlilalclsiygsaqfqplfsadgwsefaagflvggeagvawayvc

Chain 'Z':
Sequence, based on SEQRES records: (download)

>6jo5Z (Z:)
kagnwlpgsdapawlpddlpgnygfdplslgkepaslkrftesevihgrwamlgvagsla
vellgygnwydaplwavnggkatwfgievpfdlnallafefvamaaaegqrgdaggvvyp
ggafdplgfakdssksgelklkeikngrlamvaflgfvaqhaatgkgpiaalgehlanpw
ganfatngisvpff

Sequence, based on observed residues (ATOM records): (download)

>6jo5Z (Z:)
kagnwlpgsdapawlpddlpgnygfdplslgkepaslkrftesevihgrwamlgvagsla
vellgygnwydaplwavnkatwfgievpfdlnallafefvamaaaegqrgdaggvvypgg
afdplgfakdssksgelklkeikngrlamvaflgfvaqhaatgkgpiaalgehlanpwga
nfatngisvpff