PDB entry 6jnx

View 6jnx on RCSB PDB site
Description: cryo-em structure of a q-engaged arrested complex
Deposited on 2019-03-18, released 2019-06-12
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 4.08 Å
R-factor: N/A
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: rpoA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: rpoA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA-directed RNA polymerase subunit beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: rpoB
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA-directed RNA polymerase subunit beta'
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: rpoC
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA-directed RNA polymerase subunit omega
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: rpoZ
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: RNA polymerase sigma factor rpoD
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: rpoD
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: DNA (63-mer)
    Species: Enterobacteria phage P21, synthetic [TaxId:10711]
  • Chain 'P':
    Compound: Antiterminator Q protein
    Species: Enterobacteria phage SfI [TaxId:1225789]
    Gene: Q
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: Antiterminator Q protein
    Species: Enterobacteria phage SfI [TaxId:1225789]
    Gene: Q
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: RNA (5'-r(p*ap*up*ap*ap*gp*gp*up*gp*gp*gp*gp*up*up*ap*gp*up*gp*a)-3')
    Species: Enterobacteria phage P21, synthetic [TaxId:10711]
  • Chain 'T':
    Compound: DNA (63-mer)
    Species: Enterobacteria phage P21, synthetic [TaxId:10711]
  • Heterogens: MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jnxA (A:)
mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
teikdvlasrglslgmrlenwppasiade

    Sequence, based on observed residues (ATOM records):
    >6jnxA (A:)
flkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlhe
ystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpq
hvichltdenasismrikvqrgrgyvpastrirpigrllvdacyspveriaynveaarve
qrtdldklviemetngtidpeeairraatilaeqleafv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jnxB (B:)
mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
teikdvlasrglslgmrlenwppasiade

    Sequence, based on observed residues (ATOM records):
    >6jnxB (B:)
vteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgv
lheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveiv
kpqhvichltdenasismrikvqrgrgyvpastrrllvdacyspveriaynveaarveqr
tdldklviemetngtidpeeairraatilaeqleafvd

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jnxC (C:)
mvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiq
sysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeq
evymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyr
gswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqme
lvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakd
yidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrl
salveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgil
skddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerls
lgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltr
eragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvt
deihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqv
vsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakr
ggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepverg
dvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvs
rdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeek
llraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdl
seelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqyde
lkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskin
piedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevak
lrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellk
lgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplg
gkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmp
esfnvllkeirslginielede

    Sequence, based on observed residues (ATOM records):
    >6jnxC (C:)
vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqs
ysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqe
vymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyrg
swldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqmel
vperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdy
idestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrls
alveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgils
kddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlsl
gdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltre
ragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtd
eihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvv
svgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrg
gvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergd
vladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsr
dtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekl
lraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdls
eelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydel
khefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinp
iedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevakl
refiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellkl
gdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplgg
kaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpe
sfnvllkeirslginieled

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jnxD (D:)
mkdllkflkaqtkteefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcar
ifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflksl
psrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakm
gaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmilt
vlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlq
eavdalldngrrgraitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpy
lrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehp
vllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlea
ralmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsg
laslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkka
iskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeae
vaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfn
siymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgar
kgladtalktansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvl
grvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcyg
rdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsikl
snvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanw
dphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalki
vdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglpr
vadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfe
gervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqm
lrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfi
saasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraageapa
apqvtaedasaslaellnaglggsdne

    Sequence, based on observed residues (ATOM records):
    >6jnxD (D:)
efdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgky
krlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdi
ervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdle
qeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpl
dggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgra
itgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmale
lfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgiq
afepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspan
gepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvritey
ekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglk
ptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvta
gerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaa
qirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalktansgy
ltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtad
ilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeai
gviaaqsigepgtqltmrssiqvknkgsiklsnvksvvnssgklvitsrntelklidefg
rtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrq
tdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivql
edgvqissgdtlaripqgglprvadlfearrpkepailaeisgivsfgketkgkrrlvit
pvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevq
dvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkv
gatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlip
agtgyayhqdrmrrr

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6jnxE (E:)
marvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglin
nqildvrerqeqqeqeaaelqavtaiaegrr

    Sequence, based on observed residues (ATOM records):
    >6jnxE (E:)
arvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglinn
qildvrerqeqqeqeaael

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6jnxF (F:)
meqnpqsqlkllvtrgkeqgyltyaevndhlpedivdsdqiediiqmindmgiqvmeeap
daddlmlaentadedaaeaaaqvlssveseigrttdpvrmymremgtvelltregeidia
kriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdpnaeedlaptath
vgselsqedldddededeedgdddsadddnsidpelarekfaelraqyvvtrdtikakgr
shataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkk
nfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkd
inrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfe
yrrgykfstyatwwirqaitrsiadqartiripvhmietinklnrisrqmlqemgreptp
eelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsattesl
raathdvlagltareakvlrmrfgidmntdytleevgkqfdvtrerirqieakalrklrh
psrsevlrsfldd

    Sequence, based on observed residues (ATOM records):
    >6jnxF (F:)
eigrttdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqyd
rveaeearlsdlitgfvddpelarekfaelraqyvvtrdtikataqeeilklsevfkqfr
lvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaai
amnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemv
eanlrlvisiakkytnrglqfldliqegniglmkavdkfeyrrgykfstyatwwirqait
rsiadqa

  • Chain 'N':
    No sequence available.

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6jnxP (P:)
mgirelnltkeqhewlngwlelwgawvysgrlekrmssviakfmesvepgrvmtrpmcnd
ddgmlisqvvdsvmyidkkafgillsyyahgsskhaiasyyhrvarprkmlcrgggriqk
pslatcrrevdeilnaslfmiypvldsafknrkrvekikhva

    Sequence, based on observed residues (ATOM records):
    >6jnxP (P:)
nltkeqhewlngwlelwgawvysgrlekrmssviakfmesvepgrvmtrpmcndddgmli
sqvvdsvmyidkkafgillsyyahgsskhaiasyyhrvarprkmlcrgggriqkpslatc
rrevdeilnaslfmiypvldsafknrk

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6jnxQ (Q:)
mgirelnltkeqhewlngwlelwgawvysgrlekrmssviakfmesvepgrvmtrpmcnd
ddgmlisqvvdsvmyidkkafgillsyyahgsskhaiasyyhrvarprkmlcrgggriqk
pslatcrrevdeilnaslfmiypvldsafknrkrvekikhva

    Sequence, based on observed residues (ATOM records):
    >6jnxQ (Q:)
nltkeqhewlngwlelwgawvysgrlekrmssviakfmesvdddgmlisqvvdsvmyidk
kafgillsyyahgsskhaiasyyhrvarprkmlcrgggriqkpslatcrrevdeilnasl
fmiypv

  • Chain 'R':
    No sequence available.

  • Chain 'T':
    No sequence available.