PDB entry 6jnf

View 6jnf on RCSB PDB site
Description: cryo-em structure of the translocator of the outer mitochondrial membrane
Deposited on 2019-03-14, released 2019-10-16
The last revision was dated 2019-11-27, with a file datestamp of 2019-11-22.
Experiment type: EM
Resolution: 3.81 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Mitochondrial import receptor subunit tom40
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: TOM40
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Mitochondrial import receptor subunit TOM7
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: TOM7
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Mitochondrial import receptor subunit TOM22
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: TOM22
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Mitochondrial import receptor subunit TOM5
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: TOM5
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Mitochondrial import receptor subunit TOM6
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: TOM6
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Mitochondrial import receptor subunit tom40
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: TOM40
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Mitochondrial import receptor subunit TOM7
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: TOM7
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Mitochondrial import receptor subunit TOM22
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: TOM22
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Mitochondrial import receptor subunit TOM5
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: TOM5
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Mitochondrial import receptor subunit TOM6
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: TOM6
    Database cross-references and differences (RAF-indexed):
  • Heterogens: 46E

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jnfA (A:)
msaptplaeasqiptipalspltakqskgnffssnpissfvvdtykqlhshrqslelvnp
gtvenlnkevsrdvflsqyfftglradlnkafsmnpafqtshtfsigsqalpkyafsalf
andnlfaqgnidndlsvsgrlnygwdkkniskvnlqisdgqptmcqleqdyqasdfsvnv
ktlnpsfsekgeftgvavasflqsvtpqlalgletlysrtdgsapgdagvsyltryvskk
qdwifsgqlqangaliaslwrkvaqnveagiettlqagmvpitdplmgtpigiqptvegs
ttigakyeyrqsvyrgtldsngkvacflerkvlptlsvlfcgeidhfkndtkigcglqfe
tagnqellmlqqgldadgnplqalpql

    Sequence, based on observed residues (ATOM records):
    >6jnfA (A:)
qlhshrqslelvnpgtvenlnkevsrdvflsqyfftglradlnkafsnpafqtshtfsig
sqalpkyafsalfandnlfaqgnidndlsvsgrlnygwkniskvnlqisdgqptmcqleq
dyqasdfsvnvktlnpgeftgvavasflqsvtpqlalgletlysrtdgsapgdagvsylt
ryvskkqdwifsgqlqangaliaslwrkvaqnveagiettlqaigiqptvegsttigaky
eyrqsvyrgtldsngkvacflerkvlptlsvlfcgeidhfkndtkigcglqfetagnqel
lmlqqg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jnfB (B:)
msflpsfilsdeskeriskiltlthnvahygwipfvlylgwahtsnrpnflnllsplpsv

    Sequence, based on observed residues (ATOM records):
    >6jnfB (B:)
iskiltlthnvahygwipfvlylgwahtsnrpnflnllspl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jnfC (C:)
mvelteikddvvqldepqfsrnqaiveekasatnndvvddeddsdsdfedefdenetlld
rivalkdivppgkrqtisnffgftssfvrnaftksgnlawtltttalllgvplslsilae
qqliemektfdlqsdannilaqgekdaaatangspghhhhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jnfC (C:)
fvrnaftksgnlawtltttalllgvplslsilaeqqliemektf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6jnfD (D:)
mfglpqqevseeekrahqeqtektlkqaayvaaflwvspmiwhlvkkqwk

    Sequence, based on observed residues (ATOM records):
    >6jnfD (D:)
hqeqtektlkqaayvaaflwvspmiwhlvkkqwk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6jnfE (E:)
mdgmfampgaaagaaspqqpksrfqafkesplytialngaffvagvafiqsplmdmlapq
l

    Sequence, based on observed residues (ATOM records):
    >6jnfE (E:)
qafkesplytialngaffvagvafiqsplmdmlapql

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6jnfF (F:)
msaptplaeasqiptipalspltakqskgnffssnpissfvvdtykqlhshrqslelvnp
gtvenlnkevsrdvflsqyfftglradlnkafsmnpafqtshtfsigsqalpkyafsalf
andnlfaqgnidndlsvsgrlnygwdkkniskvnlqisdgqptmcqleqdyqasdfsvnv
ktlnpsfsekgeftgvavasflqsvtpqlalgletlysrtdgsapgdagvsyltryvskk
qdwifsgqlqangaliaslwrkvaqnveagiettlqagmvpitdplmgtpigiqptvegs
ttigakyeyrqsvyrgtldsngkvacflerkvlptlsvlfcgeidhfkndtkigcglqfe
tagnqellmlqqgldadgnplqalpql

    Sequence, based on observed residues (ATOM records):
    >6jnfF (F:)
qlhshrqslelvnpgtvenlnkevsrdvflsqyfftglradlnkafsnpafqtshtfsig
sqalpkyafsalfandnlfaqgnidndlsvsgrlnygwkniskvnlqisdgqptmcqleq
dyqasdfsvnvktlnpgeftgvavasflqsvtpqlalgletlysrtdgsapgdagvsylt
ryvskkqdwifsgqlqangaliaslwrkvaqnveagiettlqaigiqptvegsttigaky
eyrqsvyrgtldsngkvacflerkvlptlsvlfcgeidhfkndtkigcglqfetagnqel
lmlqqg

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6jnfG (G:)
msflpsfilsdeskeriskiltlthnvahygwipfvlylgwahtsnrpnflnllsplpsv

    Sequence, based on observed residues (ATOM records):
    >6jnfG (G:)
iskiltlthnvahygwipfvlylgwahtsnrpnflnllspl

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6jnfH (H:)
mvelteikddvvqldepqfsrnqaiveekasatnndvvddeddsdsdfedefdenetlld
rivalkdivppgkrqtisnffgftssfvrnaftksgnlawtltttalllgvplslsilae
qqliemektfdlqsdannilaqgekdaaatangspghhhhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6jnfH (H:)
fvrnaftksgnlawtltttalllgvplslsilaeqqliemektf

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6jnfI (I:)
mfglpqqevseeekrahqeqtektlkqaayvaaflwvspmiwhlvkkqwk

    Sequence, based on observed residues (ATOM records):
    >6jnfI (I:)
hqeqtektlkqaayvaaflwvspmiwhlvkkqwk

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6jnfJ (J:)
mdgmfampgaaagaaspqqpksrfqafkesplytialngaffvagvafiqsplmdmlapq
l

    Sequence, based on observed residues (ATOM records):
    >6jnfJ (J:)
qafkesplytialngaffvagvafiqsplmdmlapql