PDB entry 6jmr

View 6jmr on RCSB PDB site
Description: cd98hc extracellular domain bound to hbj127 fab and mem-108 fab
Deposited on 2019-03-13, released 2019-06-19
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: EM
Resolution: 4.1 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: 4F2 cell-surface antigen heavy chain
    Species: Homo sapiens [TaxId:9606]
    Gene: SLC3A2, MDU1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: antibody
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JMR (0-218)
  • Chain 'D':
    Compound: antibody
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JMR (0-218)
  • Chain 'E':
    Compound: antibody
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JMR (0-219)
  • Chain 'F':
    Compound: antibody
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JMR (0-217)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jmrB (B:)
gselqppeasiavvsiprqlpgshseagvqglsagddselgshcvaqtglellasgdplp
sasqnaemietgsdcvtqaglqllassdppalasknaevtgtmsqdtevdmkevelnele
pekqpmnaasgaamslagaeknglvkikvaedeaeaaaaakftglskeellkvagspgwv
rtrwallllfwlgwlgmlagavviivraprcrelpaqkwwhtgalyrigdlqafqghgag
nlaglkgrldylsslkvkglvlgpihknqkddvaqtdllqidpnfgskedfdsllqsakk
ksirvildltpnyrgenswfstqvdtvatkvkdalefwlqagvdgfqvrdienlkdassf
laewqnitkgfsedrlliagtnssdlqqilsllesnkdllltssylsdsgstgehtkslv
tqylnatgnrwcswslsqarlltsflpaqllrlyqlmlftlpgtpvfsygdeigldaaal
pgqpmeapvmlwdessfpdipgavsanmtvkgqsedpgsllslfrrlsdqrskersllhg
dfhafsagpglfsyirhwdqnerflvvlnfgdvglsaglqasdlpasaslpakadlllst
qpgreegsplelerlklepheglllrfpyaa

    Sequence, based on observed residues (ATOM records):
    >6jmrB (B:)
crelpaqkwwhtgalyrigdlqafqghgagnlaglkgrldylsslkvkglvlgpihknqk
ddvaqtdllqidpnfgskedfdsllqsakkksirvildltpnyrgenswfstqvdtvatk
vkdalefwlqagvdgfqvrdienlkdassflaewqnitkgfsedrlliagtnssdlqqil
sllesnkdllltssylsdsgstgehtkslvtqylnatgnrwcswslsqarlltsflpaql
lrlyqlmlftlpgtpvfsygdeigldaaalpgqpmeapvmlwdessfpdipgavsanmtv
kgqsedpgsllslfrrlsdqrskersllhgdfhafsagpglfsyirhwdqnerflvvlnf
gdvglsaglqasdlpasaslpakadlllstqpgreegsplelerlklepheglllrfpya
a

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jmrC (C:)
qvqlkesgpglvapsqslsitctvsgfpltxxxxxwvrqppgkglewlgxxxxxxxxxxx
xxxxxrlsiskdnsksqvflkmnslqtddtaryycarxxxxxxxxxxwgqgtsvtvssak
ttppsvyplapgsxxxxxsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdly
tlsssvtvpsstwpsetvtcnvahpasstkvdkkivprd

    Sequence, based on observed residues (ATOM records):
    >6jmrC (C:)
qvqlkesgpglvapsqslsitctvsgfpltxxxxxwvrqppgkglewlgxxxxxxxxxxx
xxxxxrlsiskdnsksqvflkmnslqtddtaryycarxxxxxxxxxxwgqgtsvtvssak
ttppsvyplapgssmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsss
vtvpsstwpsetvtcnvahpasstkvdkkivprd

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6jmrD (D:)
divmsqspsslvvsvgekvtmscxxxxxxxxxxxxxxxxxwyqqkpgqspklliyxxxxx
xxgvpdrftgsgsgtdftltissvkaedlavyycxxxxxxxxxfgggtkleikradaapt
vsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstys
msstltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6jmrE (E:)
qvkllesgpglvqpsqslsitctvsgfslttygihwvrqppgkglewlgviwsngridyn
aafisrlsitkdnsksqvffkmnslqdddtaiyycarnvydsltwftywgqgtlvtvsaa
kttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdl
ytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprd

    Sequence, based on observed residues (ATOM records):
    >6jmrE (E:)
qvkllesgpglvqpsqslsitctvsgfslttygihwvrqppgkglewlgviwsngridyn
aafisrlsitkdnsksqvffkmnslqdddtaiyycarnvydsltwftywgqgtlvtvsaa
kttppsvyplapgssmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlss
svtvpsstwpsetvtcnvahpasstkvdkkivprd

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6jmrF (F:)
diqmtqspsslavsvgekvtmtckssqsllyssnqknylawyqqkpgqspkllifwastr
esgvpdrftgsgsgtdfpltissvkaedlavyfcqqytsyptfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne