PDB entry 6jmq

View 6jmq on RCSB PDB site
Description: lat1-cd98hc complex bound to mem-108 fab
Deposited on 2019-03-13, released 2019-06-19
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: EM
Resolution: 3.31 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Large neutral amino acids transporter small subunit 1
    Species: Homo sapiens [TaxId:9606]
    Gene: SLC7A5, CD98LC, LAT1, MPE16
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 4F2 cell-surface antigen heavy chain
    Species: Homo sapiens [TaxId:9606]
    Gene: SLC3A2, MDU1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: antibody
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JMQ (0-218)
  • Chain 'D':
    Compound: antibody
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6JMQ (0-218)
  • Heterogens: CLR, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6jmqA (A:)
magagpkrralaapaaeekeearekmlaaksadgsapagegegvtlqrnitllngvaiiv
gtiigsgifvtptgvlkeagspglalvvwaacgvfsivgalcyaelgttisksggdyaym
levygslpaflklwielliirpssqyivalvfatyllkplfptcpvpeeaaklvaclcvl
lltavncysvkaatrvqdafaaakllalaliillgfvqigkgdvsnldpnfsfegtkldv
gnivlalysglfayggwnylnfvteeminpyrnlplaiiislpivtlvyvltnlayfttl
steqmlsseavavdfgnyhlgvmswiipvfvglscfgsvngslftssrlffvgsreghlp
silsmihpqlltpvpslvftcvmtllyafskdifsvinffsffnwlcvalaiigmiwlrh
rkpelerpikvnlalpvffilaclfliavsfwktpvecgigftiilsglpvyffgvwwkn
kpkwllqgifsttvlcqklmqvvpqetdykddddk

    Sequence, based on observed residues (ATOM records):
    >6jmqA (A:)
itllngvaiivgtiigsgifvtptgvlkeagspglalvvwaacgvfsivgalcyaelgtt
isksggdyaymlevygslpaflklwielliirpssqyivalvfatyllkplfptcpvpee
aaklvaclcvllltavncysvkaatrvqdafaaakllalaliillgfvqifsfegtkldv
gnivlalysglfayggwnylnfvteeminpyrnlplaiiislpivtlvyvltnlayfttl
steqmlsseavavdfgnyhlgvmswiipvfvglscfgsvngslftssrlffvlltpvpsl
vftcvmtllyafskdifsvinffsffnwlcvalaiigmiwlrhrkpelerpikvnlalpv
ffilaclfliavsfwktpvecgigftiilsglpvyffgvwwkn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6jmqB (B:)
gselqppeasiavvsiprqlpgshseagvqglsagddselgshcvaqtglellasgdplp
sasqnaemietgsdcvtqaglqllassdppalasknaevtgtmsqdtevdmkevelnele
pekqpmnaasgaamslagaeknglvkikvaedeaeaaaaakftglskeellkvagspgwv
rtrwallllfwlgwlgmlagavviivraprcrelpaqkwwhtgalyrigdlqafqghgag
nlaglkgrldylsslkvkglvlgpihknqkddvaqtdllqidpnfgskedfdsllqsakk
ksirvildltpnyrgenswfstqvdtvatkvkdalefwlqagvdgfqvrdienlkdassf
laewqnitkgfsedrlliagtnssdlqqilsllesnkdllltssylsdsgstgehtkslv
tqylnatgnrwcswslsqarlltsflpaqllrlyqlmlftlpgtpvfsygdeigldaaal
pgqpmeapvmlwdessfpdipgavsanmtvkgqsedpgsllslfrrlsdqrskersllhg
dfhafsagpglfsyirhwdqnerflvvlnfgdvglsaglqasdlpasaslpakadlllst
qpgreegsplelerlklepheglllrfpyaa

    Sequence, based on observed residues (ATOM records):
    >6jmqB (B:)
rtrwallllfwlgwlgmlagavviivraprcrelpaqkwwhtgalyrigdlqafqghgag
nlaglkgrldylsslkvkglvlgpihknqkddvaqtdllqidpnfgskedfdsllqsakk
ksirvildltpnyrgenswfstqvdtvatkvkdalefwlqagvdgfqvrdienlkdassf
laewqnitkgfsedrlliagtnssdlqqilsllesnkdllltssylsdsgstgehtkslv
tqylnatgnrwcswslsqarlltsflpaqllrlyqlmlftlpgtpvfsygdeigldaaal
pgqpmeapvmlwdessfpdipgavsanmtvkgqsedpgsllslfrrlsdqrskersllhg
dfhafsagpglfsyirhwdqnerflvvlnfgdvglsaglqasdlpasaslpakadlllst
qpgreegsplelerlklepheglllrfpyaa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6jmqC (C:)
qvqlkesgpglvapsqslsitctvsgfpltxxxxxwvrqppgkglewlgxxxxxxxxxxx
xxxxxrlsiskdnsksqvflkmnslqtddtaryycarxxxxxxxxxxwgqgtsvtvssak
ttppsvyplapgsxxxxxsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdly
tlsssvtvpsstwpsetvtcnvahpasstkvdkkivprd

    Sequence, based on observed residues (ATOM records):
    >6jmqC (C:)
qvqlkesgpglvapsqslsitctvsgfpltxxxxxwvrqppgkglewlgxxxxxxxxxxx
xxxxxrlsiskdnsksqvflkmnslqtddtaryycarxxxxxxxxxxwgqgtsvtvssak
ttppsvyplapgssmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsss
vtvpsstwpsetvtcnvahpasstkvdkkivprd

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6jmqD (D:)
divmsqspsslvvsvgekvtmscxxxxxxxxxxxxxxxxxwyqqkpgqspklliyxxxxx
xxgvpdrftgsgsgtdftltissvkaedlavyycxxxxxxxxxfgggtkleikradaapt
vsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstys
msstltltkdeyerhnsytceathktstspivksfnrne