PDB entry 6jml

View 6jml on RCSB PDB site
Description: Re-refined structure of R-state L-lactate dehydrogenase fromLactobacillus casei
Class: oxidoreductase
Keywords: oxidoreductase, rossmann fold, glycolysis
Deposited on 2019-03-12, released 2020-05-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-05-06, with a file datestamp of 2020-05-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jmla1, d6jmla2
  • Chain 'B':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jmlb1, d6jmlb2
  • Chain 'C':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jmlc1, d6jmlc2
  • Chain 'D':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jmld1, d6jmld2
  • Chain 'E':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jmle1, d6jmle2
  • Chain 'F':
    Compound: l-lactate dehydrogenase
    Species: Lactobacillus casei [TaxId:1582]
    Gene: LDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jmlf1, d6jmlf2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6jmlA (A:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6jmlA (A:)
itdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftsp
kkiysaeysdakdadlvvitagaptrldlvnknlkilksivdpivdsgfngiflvaanpv
diltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdtefpv
wshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatalarisk
ailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqksasq
lkkvltdaf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6jmlB (B:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6jmlB (B:)
itdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftsp
kkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngiflv
aanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgd
tefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatal
ariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmq
ksasqlkkvltdafa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6jmlC (C:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6jmlC (C:)
itdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftsp
kkiysaeysdakdadlvvitvnknlkilksivdpivdsgfngiflvaanpvdiltyatwk
lsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdtefpvwshaniggv
tiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatalariskailndenav
lplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqksasqlkkvl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6jmlD (D:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6jmlD (D:)
itdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftsp
kkiysaeysdakdadlvvitagaptrldlvnknlkilksivdpivdsgfngiflvaanpv
diltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgdtefpv
wshaniggvtiaewvkahedklvkmfedvrdaayeiiklkgatfygiatalariskailn
denavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmqksasqlkkv
ltda

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6jmlE (E:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6jmlE (E:)
itdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftsp
kkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngiflv
aanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgd
tefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatal
ariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmq
ksasqlkkvltdaf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6jmlF (F:)
masitdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpf
tspkkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngi
flvaanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimge
hgdtefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygia
talariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheee
smqksasqlkkvltdafakndietrq

    Sequence, based on observed residues (ATOM records): (download) 
    >6jmlF (F:)
itdkdhqkvilvgdgavgssyayamvlqgiaqeigivdifkdktkgdaidlsnalpftsp
kkiysaeysdakdadlvvitagapqkpgetrldlvnknlkilksivdpivdsgfngiflv
aanpvdiltyatwklsgfpknrvvgsgtsldtarfrqsiaemvnvdarsvhayimgehgd
tefpvwshaniggvtiaewvkahpeikedklvkmfedvrdaayeiiklkgatfygiatal
ariskailndenavlplsvymdgqyglndiyigtpavinrngiqnileipltdheeesmq
ksasqlkkvltdafa